View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17999_low_3 (Length: 486)

Name: NF17999_low_3
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17999_low_3
NF17999_low_3
[»] chr1 (41 HSPs)
chr1 (1-467)||(9629646-9630138)
chr1 (244-340)||(36878417-36878514)
chr1 (245-320)||(398772-398847)
chr1 (253-340)||(14359537-14359623)
chr1 (225-320)||(20157338-20157432)
chr1 (251-340)||(5898279-5898368)
chr1 (251-320)||(16927198-16927267)
chr1 (244-297)||(38503320-38503373)
chr1 (244-319)||(1486715-1486790)
chr1 (245-320)||(7918218-7918293)
chr1 (245-319)||(17754289-17754363)
chr1 (244-294)||(52903252-52903302)
chr1 (244-297)||(9828044-9828097)
chr1 (251-320)||(34298413-34298482)
chr1 (244-343)||(24577192-24577292)
chr1 (244-340)||(28273094-28273190)
chr1 (218-297)||(113299-113382)
chr1 (258-297)||(2896141-2896180)
chr1 (193-240)||(9828122-9828169)
chr1 (259-302)||(11605956-11605999)
chr1 (246-297)||(17425101-17425152)
chr1 (240-319)||(22794080-22794159)
chr1 (246-297)||(25098563-25098614)
chr1 (253-340)||(27471581-27471668)
chr1 (246-296)||(6427351-6427401)
chr1 (243-297)||(17831536-17831590)
chr1 (264-298)||(22781441-22781475)
chr1 (244-298)||(34371713-34371766)
chr1 (251-297)||(40181871-40181917)
chr1 (244-289)||(1864886-1864931)
chr1 (259-296)||(2851022-2851059)
chr1 (240-297)||(12443462-12443519)
chr1 (244-293)||(44482234-44482283)
chr1 (244-297)||(46348389-46348442)
chr1 (251-299)||(48148050-48148099)
chr1 (264-320)||(5927366-5927422)
chr1 (244-296)||(9709821-9709873)
chr1 (244-296)||(24176373-24176425)
chr1 (245-297)||(25361886-25361938)
chr1 (244-296)||(31015044-31015096)
chr1 (244-340)||(48450593-48450689)
[»] chr6 (45 HSPs)
chr6 (193-302)||(9025450-9025558)
chr6 (246-317)||(10888982-10889053)
chr6 (201-320)||(9027155-9027273)
chr6 (240-340)||(2117034-2117133)
chr6 (244-320)||(7086772-7086848)
chr6 (193-297)||(7938116-7938214)
chr6 (244-317)||(30866150-30866223)
chr6 (244-296)||(7265599-7265651)
chr6 (252-320)||(8805586-8805654)
chr6 (244-320)||(13851713-13851789)
chr6 (245-297)||(17341671-17341723)
chr6 (245-297)||(19040352-19040404)
chr6 (249-320)||(7625099-7625170)
chr6 (193-297)||(7996327-7996437)
chr6 (193-297)||(8022364-8022474)
chr6 (246-341)||(32511674-32511769)
chr6 (244-338)||(16833267-16833361)
chr6 (251-296)||(1532241-1532286)
chr6 (251-320)||(3398596-3398664)
chr6 (251-320)||(9658856-9658925)
chr6 (244-297)||(20371116-20371169)
chr6 (244-340)||(10770680-10770776)
chr6 (244-340)||(19147799-19147895)
chr6 (240-292)||(24832593-24832645)
chr6 (193-291)||(31959165-31959264)
chr6 (251-298)||(32320682-32320729)
chr6 (193-236)||(32978844-32978887)
chr6 (240-311)||(34446551-34446622)
chr6 (261-311)||(7723273-7723323)
chr6 (253-331)||(12696290-12696368)
chr6 (246-296)||(13689500-13689550)
chr6 (253-319)||(25038086-25038152)
chr6 (258-296)||(34447378-34447416)
chr6 (240-289)||(6389751-6389800)
chr6 (244-297)||(7377979-7378032)
chr6 (244-297)||(10842532-10842585)
chr6 (244-297)||(13364711-13364764)
chr6 (244-297)||(16766697-16766750)
chr6 (240-289)||(17168465-17168514)
chr6 (244-297)||(21924941-21924994)
chr6 (244-297)||(26562689-26562742)
chr6 (244-340)||(34595090-34595187)
chr6 (218-250)||(7930358-7930390)
chr6 (250-290)||(8389484-8389524)
chr6 (252-296)||(31579239-31579283)
[»] chr7 (37 HSPs)
chr7 (244-320)||(21140988-21141064)
chr7 (244-339)||(15902780-15902875)
chr7 (251-320)||(5235963-5236032)
chr7 (244-317)||(20549771-20549844)
chr7 (260-320)||(26733281-26733341)
chr7 (245-308)||(17851420-17851483)
chr7 (245-311)||(42720897-42720963)
chr7 (244-317)||(3520348-3520421)
chr7 (240-289)||(23751908-23751957)
chr7 (252-297)||(29787383-29787428)
chr7 (245-297)||(5548676-5548728)
chr7 (244-320)||(19206027-19206103)
chr7 (245-297)||(32308120-32308172)
chr7 (244-320)||(49107798-49107873)
chr7 (193-240)||(598275-598322)
chr7 (193-240)||(9778572-9778619)
chr7 (220-340)||(12289070-12289189)
chr7 (240-289)||(5938480-5938529)
chr7 (253-306)||(11831423-11831476)
chr7 (252-289)||(11890933-11890970)
chr7 (253-290)||(13300417-13300454)
chr7 (252-301)||(14729697-14729746)
chr7 (218-291)||(18215167-18215239)
chr7 (244-297)||(19992001-19992054)
chr7 (244-297)||(24339642-24339695)
chr7 (240-289)||(29812666-29812715)
chr7 (252-292)||(2424619-2424659)
chr7 (241-340)||(4017797-4017897)
chr7 (241-289)||(8239053-8239101)
chr7 (261-336)||(11722121-11722197)
chr7 (244-320)||(22602716-22602792)
chr7 (245-297)||(22868042-22868094)
chr7 (253-297)||(23191896-23191940)
chr7 (253-297)||(25481902-25481946)
chr7 (244-320)||(26329388-26329464)
chr7 (244-320)||(27945018-27945094)
chr7 (240-339)||(43249950-43250050)
[»] scaffold0020 (1 HSPs)
scaffold0020 (218-319)||(135293-135393)
[»] chr3 (36 HSPs)
chr3 (250-311)||(23870571-23870632)
chr3 (244-347)||(26508060-26508163)
chr3 (244-297)||(8383257-8383310)
chr3 (240-317)||(34307782-34307859)
chr3 (244-296)||(17005625-17005677)
chr3 (219-297)||(13620744-13620823)
chr3 (244-297)||(7928450-7928503)
chr3 (244-325)||(11658787-11658868)
chr3 (244-296)||(8039841-8039893)
chr3 (263-311)||(15544679-15544727)
chr3 (251-311)||(29112293-29112353)
chr3 (253-340)||(26492220-26492307)
chr3 (244-290)||(29508451-29508497)
chr3 (193-235)||(29508522-29508564)
chr3 (244-320)||(11665921-11665997)
chr3 (225-325)||(14223841-14223940)
chr3 (245-296)||(1550141-1550192)
chr3 (226-289)||(25892468-25892530)
chr3 (251-297)||(10690275-10690321)
chr3 (260-310)||(21257008-21257058)
chr3 (239-289)||(25652032-25652082)
chr3 (244-340)||(40993341-40993432)
chr3 (245-311)||(49505161-49505227)
chr3 (240-289)||(15864841-15864890)
chr3 (195-240)||(15999957-16000002)
chr3 (246-307)||(16192758-16192819)
chr3 (244-317)||(22774076-22774149)
chr3 (246-291)||(25948895-25948940)
chr3 (240-297)||(35994740-35994796)
chr3 (253-297)||(4987306-4987350)
chr3 (193-296)||(11610522-11610623)
chr3 (253-289)||(15796309-15796345)
chr3 (240-320)||(24205043-24205123)
chr3 (252-320)||(25064886-25064954)
chr3 (245-297)||(32804547-32804599)
chr3 (258-298)||(51206373-51206413)
[»] chr8 (29 HSPs)
chr8 (245-319)||(24362209-24362283)
chr8 (244-311)||(34897071-34897138)
chr8 (244-320)||(12570514-12570590)
chr8 (240-320)||(39820406-39820486)
chr8 (244-331)||(24669399-24669486)
chr8 (245-291)||(3025557-3025603)
chr8 (241-311)||(3658133-3658203)
chr8 (244-289)||(11927092-11927137)
chr8 (244-297)||(12606835-12606888)
chr8 (258-298)||(18067954-18067994)
chr8 (251-311)||(39954292-39954352)
chr8 (253-320)||(4673440-4673507)
chr8 (253-320)||(8343293-8343360)
chr8 (251-297)||(4611534-4611580)
chr8 (244-314)||(20679401-20679471)
chr8 (244-298)||(25566840-25566894)
chr8 (246-320)||(36934647-36934721)
chr8 (244-289)||(11944673-11944718)
chr8 (251-312)||(12570747-12570808)
chr8 (244-297)||(13844602-13844655)
chr8 (244-297)||(31236583-31236636)
chr8 (244-320)||(2572062-2572138)
chr8 (262-298)||(18069155-18069191)
chr8 (193-237)||(22652057-22652101)
chr8 (224-320)||(22850321-22850416)
chr8 (245-297)||(27101515-27101566)
chr8 (251-339)||(29775994-29776082)
chr8 (251-315)||(34201059-34201123)
chr8 (244-292)||(34222952-34223000)
[»] chr5 (33 HSPs)
chr5 (240-294)||(5467980-5468034)
chr5 (239-320)||(25863181-25863262)
chr5 (244-297)||(28588680-28588733)
chr5 (251-314)||(12927637-12927700)
chr5 (193-340)||(2436878-2437025)
chr5 (244-297)||(3966503-3966556)
chr5 (251-304)||(10022625-10022678)
chr5 (239-320)||(14574051-14574131)
chr5 (244-297)||(23220983-23221036)
chr5 (246-298)||(6471897-6471949)
chr5 (245-317)||(27144443-27144515)
chr5 (244-296)||(30502394-30502446)
chr5 (244-296)||(30542737-30542789)
chr5 (246-314)||(39205863-39205931)
chr5 (193-297)||(39695956-39696058)
chr5 (244-320)||(23015995-23016073)
chr5 (244-295)||(34879352-34879403)
chr5 (253-320)||(42488068-42488135)
chr5 (251-301)||(17593735-17593785)
chr5 (245-299)||(25817493-25817547)
chr5 (253-311)||(39698527-39698585)
chr5 (264-317)||(7175045-7175098)
chr5 (240-289)||(7997168-7997217)
chr5 (258-311)||(19438329-19438382)
chr5 (244-297)||(21191062-21191115)
chr5 (245-298)||(32630742-32630795)
chr5 (244-297)||(41091263-41091316)
chr5 (240-289)||(43554529-43554578)
chr5 (245-317)||(19168828-19168900)
chr5 (244-296)||(21576751-21576803)
chr5 (253-297)||(27932235-27932279)
chr5 (244-296)||(36838544-36838596)
chr5 (219-290)||(38464344-38464416)
[»] chr2 (39 HSPs)
chr2 (244-294)||(34691811-34691861)
chr2 (244-294)||(34714223-34714273)
chr2 (244-297)||(37411250-37411303)
chr2 (253-320)||(12940950-12941017)
chr2 (246-320)||(21616739-21616813)
chr2 (244-317)||(23718006-23718079)
chr2 (244-317)||(24105678-24105751)
chr2 (244-320)||(20539680-20539756)
chr2 (244-340)||(30404856-30404952)
chr2 (245-340)||(27286299-27286394)
chr2 (244-311)||(29970555-29970622)
chr2 (251-297)||(28677909-28677955)
chr2 (245-311)||(31808063-31808129)
chr2 (244-298)||(44860319-44860373)
chr2 (240-317)||(23354654-23354731)
chr2 (240-289)||(25544489-25544538)
chr2 (193-297)||(42832237-42832335)
chr2 (252-320)||(21782832-21782900)
chr2 (252-296)||(28412351-28412395)
chr2 (258-305)||(22084852-22084899)
chr2 (258-297)||(24975345-24975384)
chr2 (244-319)||(36756350-36756425)
chr2 (219-290)||(18622613-18622690)
chr2 (260-297)||(1327978-1328015)
chr2 (252-297)||(16069268-16069313)
chr2 (252-297)||(18276521-18276566)
chr2 (240-297)||(19573978-19574035)
chr2 (191-236)||(23058387-23058432)
chr2 (244-289)||(30527601-30527646)
chr2 (244-316)||(4882702-4882774)
chr2 (262-294)||(6045940-6045972)
chr2 (261-297)||(8950338-8950374)
chr2 (241-297)||(10535762-10535818)
chr2 (244-340)||(18841019-18841115)
chr2 (251-295)||(25080902-25080946)
chr2 (244-296)||(31018591-31018643)
chr2 (244-284)||(38355893-38355933)
chr2 (244-296)||(39279676-39279728)
chr2 (253-297)||(39323264-39323308)
[»] chr4 (28 HSPs)
chr4 (193-297)||(37203264-37203366)
chr4 (240-340)||(22440602-22440702)
chr4 (225-320)||(24343484-24343578)
chr4 (193-297)||(3712458-3712568)
chr4 (261-311)||(56488533-56488583)
chr4 (231-320)||(14126104-14126193)
chr4 (215-291)||(35952588-35952670)
chr4 (248-338)||(7012025-7012115)
chr4 (251-297)||(8423731-8423777)
chr4 (252-302)||(56257928-56257978)
chr4 (244-297)||(40613450-40613503)
chr4 (282-317)||(35160982-35161017)
chr4 (246-296)||(36635325-36635375)
chr4 (251-317)||(40179649-40179715)
chr4 (244-290)||(54580029-54580075)
chr4 (244-297)||(999354-999407)
chr4 (241-310)||(19230312-19230381)
chr4 (244-340)||(21945459-21945556)
chr4 (244-317)||(26504305-26504378)
chr4 (253-302)||(28964263-28964312)
chr4 (244-340)||(49430982-49431079)
chr4 (251-295)||(903924-903968)
chr4 (252-296)||(16189710-16189754)
chr4 (201-245)||(21873315-21873359)
chr4 (201-245)||(21929176-21929220)
chr4 (244-296)||(29205445-29205497)
chr4 (251-291)||(30838216-30838256)
chr4 (253-297)||(38847027-38847071)
[»] scaffold0022 (1 HSPs)
scaffold0022 (251-320)||(90820-90889)
[»] scaffold1528 (1 HSPs)
scaffold1528 (245-319)||(1013-1087)
[»] scaffold0123 (1 HSPs)
scaffold0123 (244-298)||(44531-44585)
[»] scaffold0044 (2 HSPs)
scaffold0044 (195-240)||(53258-53303)
scaffold0044 (244-294)||(53183-53233)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-305)||(68249-68309)
[»] scaffold0003 (2 HSPs)
scaffold0003 (193-240)||(241672-241719)
scaffold0003 (252-340)||(241550-241639)
[»] scaffold0085 (1 HSPs)
scaffold0085 (243-317)||(26373-26447)
[»] scaffold0050 (1 HSPs)
scaffold0050 (244-336)||(70238-70331)
[»] scaffold0223 (1 HSPs)
scaffold0223 (253-297)||(20172-20216)
[»] scaffold0103 (1 HSPs)
scaffold0103 (253-297)||(51811-51855)
[»] scaffold0053 (1 HSPs)
scaffold0053 (244-320)||(8775-8851)
[»] scaffold0004 (1 HSPs)
scaffold0004 (253-297)||(92807-92851)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 9629646 - 9630138
Alignment:
Q  1 tatgaattaaataaacaatattggaccatacattgattttttcaccaaatacatacaatgccagaatgatgttatgatatacatccctggtgtttcagaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9629646 tatgaattaaataaacaatattggaccatacattcattttttcaccaaatacatacaatgccagaatgatgttatgatatacatccctggtgtttcagaa 9629745  T
Q  101 atgatcagtagagaaaagatgctttgtgtactgcatgtcattgattagttattatactatacagtcagtagtaatgtacttcactactgtgtaagcacgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  9629746 atgatcagtagagaaaagatgctttgtgtactgcatgtcattgattagttattatactata----cagtagtaatgtacttcactactgtgtaagcacgg 9629841  T
Q  201 acacttcttggacgagacgtgtcccggtgtcggacacgt---------------gacacgacacc------tataatcacactgaattatatgattttat 279  Q
    |||||||||||||||||||||||||||||||||||| ||               |||||||||||      |||||||||||||||||||||||||||||    
T  9629842 acacttcttggacgagacgtgtcccggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttat 9629941  T
Q  280 caaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagtgtgtaatcagaaa---------aaagattaagttacct 370  Q
    |||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||         ||||||||||||||||    
T  9629942 caaattattagcggtgtcgatgtgtcggtgtccatgtcgtggccgtatccgtgcttcatagtgtgtaaccagaaaaaaatacacaaagattaagttacct 9630041  T
Q  371 taatagtgaacaagtatagcatggtttcatcagcagtattaactctaacatgaacaatctcaagccttagatcttcaagaacagacattattctaag 467  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9630042 taatagtaaacaagtatagcatggtttcatcagcagtattaactctaacatgaacaatctcaagccttagatcttcaagaacagacattattctaag 9630138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 36878514 - 36878417
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgt-cgtggccgtctccgtgcttcatag 340  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| |||||| ||| |||| |||| ||||||||||||||    
T  36878514 cgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtgtccgtatccgtgcttcatag 36878417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 398772 - 398847
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| ||||| ||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtg 398847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 14359537 - 14359623
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||| ||||| |||||| ||||||| ||||||||||||| |||||   ||||| |||||||||||||| |||| ||||||||||||||    
T  14359537 taattacactaaattatgtgatttt-tcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcatag 14359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 20157338 - 20157432
Alignment:
Q  225 cggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||||||||||||  || |||||| ||| || |||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||| | ||||||||    
T  20157338 cggtgtcggacacgacac-cgacacatatgattacactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtg 20157432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 5898279 - 5898368
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| |||||||||||| ||||||| ||| |||||||||||||||   || || ||||||||||| || |||| |||||||| |||||    
T  5898279 tataattacactgaattatgtgattttttcagattattagcggtgtcggcgtctcagtgtctgtgtcatgtccgtatccgtgctacatag 5898368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 16927198 - 16927267
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||||||||||| |||||||||||||  || | | ||||| ||||||||||||||    
T  16927198 tataattacactgaattatatgattttttcaaattattagctatgccgacgtgtcagtgtctgtgtcgtg 16927267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 38503373 - 38503320
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||| ||||||||||| |||||||||||||||||||    
T  38503373 cgacacatataattacactgaaatatatgattttctcaaattattagcggtgtc 38503320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 1486715 - 1486790
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    |||||| |||||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| || || |||||||    
T  1486715 cgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgt 1486790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 7918218 - 7918293
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||||| | |||||  |||||  |||||||||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtg 7918293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 17754363 - 17754289
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    ||||| |||| | |||||||||||| | ||||| |||||||||||||||||||  |||||| | |||||||||||    
T  17754363 gacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgtcagcgtctgtgtcgt 17754289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 52903302 - 52903252
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggt 294  Q
    |||||| |||||| |||||||||||||||||||||| ||||||||| ||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattattaacggt 52903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 9828097 - 9828044
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| || ||| |||||||||||| |||||||||||||||||||| ||||||    
T  9828097 cgacacataaaattacactgaattatgtgattttatcaaattattagtggtgtc 9828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 34298482 - 34298413
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||| ||||||| |||||||||||| ||||||  |||||| || || ||||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtg 34298413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 24577192 - 24577292
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc-tgtgtcgtggccgtctccgtgcttcatagtg 342  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||  ||||||  ||||| ||||| |||   ||| |||| ||||||||||||||||    
T  24577192 cgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgttcagtgtccgtatccgtgcttcatagtg 24577291  T
Q  343 t 343  Q
    |    
T  24577292 t 24577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 28273094 - 28273190
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||||||||||| |||||| |||||  ||||||   |||| |||||  |||| || |||| ||||||||||||||    
T  28273094 cgacacttgtaattacactgaattatatgattttttcaaatgattagttgtgtcagcatgtcagtgtccttgtcatgtccgtatccgtgcttcatag 28273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 113382 - 113299
Alignment:
Q  218 cgtgtcccggtgtcggacacgtgacacgacaccta------taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||||||||| |||||||  ||||||||||||      |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  113382 cgtgtcccggtgttggacacg--acacgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 2896141 - 2896180
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  2896141 acactgaattatgtgattttctcaaattattagcggtgtc 2896180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 9828169 - 9828122
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||    
T  9828169 aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtg 9828122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 11605956 - 11605999
Alignment:
Q  259 cactgaattatatgattttatcaaattattagcggtgtcaatgt 302  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||    
T  11605956 cactgaattatatgattttttcaaattattagcgatgtcgatgt 11605999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 17425101 - 17425152
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||| ||| |||||||| ||||||||||||||||||| |||||||    
T  17425101 acacatataattacattgaattatgtgattttatcaaattattatcggtgtc 17425152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 22794080 - 22794159
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    ||||||||||||||||| |||||| ||||| | ||||| ||||||||||| | ||||  | ||||| |||||| ||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttgacgtgtcagtgtctatgtcgt 22794159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 25098563 - 25098614
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| |||||||||    
T  25098563 acacatataattacactgaattatgtgattttctcaaattatcagcggtgtc 25098614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 27471581 - 27471668
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||| |||||||||||| || |||| |||||||||||||||| ||  |||||| |||| ||||||| | |||| |  |||||||||||    
T  27471581 taattacactgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtttgtgtcgcgtccgtatatgtgcttcatag 27471668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 6427401 - 6427351
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||| |||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 17831536 - 17831590
Alignment:
Q  243 acgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||| ||| || ||||||||| || ||||||| |||||||||||||||||||    
T  17831536 acgacacatatgattacactgaataatgtgattttctcaaattattagcggtgtc 17831590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 22781475 - 22781441
Alignment:
Q  264 aattatatgattttatcaaattattagcggtgtca 298  Q
    |||||||||||||||| ||||||||||||||||||    
T  22781475 aattatatgattttataaaattattagcggtgtca 22781441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 34371766 - 34371713
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||| |||||| |||||||||||| ||||||| || |||||||||||||||||    
T  34371766 cgacacatataattacactgaattatgtgattttctc-aattattagcggtgtca 34371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 40181917 - 40181871
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||||| ||||||| ||||||||||||| |||||    
T  40181917 tataattacactgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 1864886 - 1864931
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||    
T  1864886 cgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 2851059 - 2851022
Alignment:
Q  259 cactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2851059 cactgaattatgtaattttatcaaattattagcggtgt 2851022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 12443462 - 12443519
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| ||| || ||| |||||||||||| ||||||| ||||||||||||| |||||    
T  12443462 gacacgtcacatacaattacactgaattatgtgattttctcaaattattagctgtgtc 12443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 44482283 - 44482234
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcgg 293  Q
    |||||| |||||| |||||||||||| ||||||| ||||||||| |||||    
T  44482283 cgacacatataattacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 46348389 - 46348442
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| | |||| ||||| |||||||||||||| ||||||||||||| |||||    
T  46348389 cgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtc 46348442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 48148050 - 48148099
Alignment:
Q  251 tataatcacactgaattatatga-ttttatcaaattattagcggtgtcaa 299  Q
    |||||| |||||||||||||||| |||| | |||||||||||||||||||    
T  48148050 tataattacactgaattatatgatttttttaaaattattagcggtgtcaa 48148099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 5927366 - 5927422
Alignment:
Q  264 aattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||||| ||||||||||||| |||| |  ||||| ||||| ||||||||    
T  5927366 aattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtg 5927422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 9709873 - 9709821
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||  ||||||| ||||||| ||||||||||||||||||    
T  9709873 cgacacatataattacaacgaattatgtgattttctcaaattattagcggtgt 9709821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 24176373 - 24176425
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||||||||||| ||||||||| || | ||||| ||||||||||| ||||||    
T  24176373 cgacacctataattacactgaatgatgttattttctcaaattattatcggtgt 24176425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 25361938 - 25361886
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| |||||||||||| ||||||| ||||||||| || ||||||    
T  25361938 gacacatataattacactgaattatgtgattttctcaaattatcagtggtgtc 25361886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 31015096 - 31015044
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||    
T  31015096 cgacacttgtaattacactgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 48450593 - 48450689
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| ||||| |||||| | ||||| ||||||||||||| ||||    ||||| ||||| |||||||| |||| ||| ||||||||||    
T  48450593 cgacacttgtaattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccgtatccatgcttcatag 48450689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 193 - 302
Target Start/End: Original strand, 9025450 - 9025558
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    |||||||||||||||| |||  || |||||||||||||||||||||  || |||||| |||||| |||||||||||| ||||||| |||||||||||||     
T  9025450 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacac-cgacacatataattacactgaattatgtgattttctcaaattattagca 9025548  T
Q  293 gtgtcaatgt 302  Q
    ||||| ||||    
T  9025549 gtgtccatgt 9025558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 10888982 - 10889053
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  10888982 acacatataatcacactaaattatgtgattttatcaaattattagcggtgtctatgtgtcggtgtccgtgtc 10889053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 9027273 - 9027155
Alignment:
Q  201 acacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaat 300  Q
    ||||| ||||||  || |||||||||||||||||||||  || |||||| |||||| |||| ||||||| ||||| | |||||||||||||||||||       
T  9027273 acactccttggattagccgtgtcccggtgtcggacacgacac-cgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggc 9027175  T
Q  301 gtgtcggtgtctgtgtcgtg 320  Q
    ||||| ||||| ||||||||    
T  9027174 gtgtcagtgtccgtgtcgtg 9027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 2117133 - 2117034
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 339  Q
    |||||||||| ||||||  || |||||||| ||||||| |||||||||||| ||||||   ||||| || || |||||||| ||||||||||||||||||    
T  2117133 gacacgacacttataattgcattgaattatgtgattttttcaaattattagaggtgtcggagtgtccgtatc-gtgtcgtgtccgtctccgtgcttcata 2117035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 7086848 - 7086772
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| ||||| |||||| ||||||| ||||||||||||| ||| | | ||||||||||||||||||||    
T  7086848 cgacacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtg 7086772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 7938214 - 7938116
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    ||||||||||||| || |||  || |||||| |||||||||||||      |||||| |||||| ||||| |||||||||||||| |||||||||||||     
T  7938214 aagcacggacactcctcggatcaggcgtgtctcggtgtcggacac------cgacacttataattacactaaattatatgattttttcaaattattagct 7938121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 30866150 - 30866223
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| ||| |||||||| ||||||| ||||||||||||||||||   |||||||||||| |||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 7265599 - 7265651
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||||||||||| ||||||| ||||||||||||||||||    
T  7265599 cgacacatataattacactgaattatgtgattttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 8805586 - 8805654
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||| ||||| |||||| ||||||| ||||||||||||| ||| | | ||||||||||||||||||||    
T  8805586 ataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtg 8805654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 13851789 - 13851713
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| |||||||||||  | ||||| ||||||||||||||||||| | ||||| ||||| ||||||||    
T  13851789 cgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtg 13851713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 17341671 - 17341723
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||| |||||||    
T  17341671 gacacttataattacactgaattatgtgattttatcaaattattaacggtgtc 17341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 19040404 - 19040352
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 19040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 7625170 - 7625099
Alignment:
Q  249 cctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||| | ||| |||||||| ||||| ||||||||||| | ||||| | ||||||||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtg 7625099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 7996327 - 7996437
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacc------tataatcacactgaattatatgattttatcaaatta 286  Q
    ||||||||| ||| ||||||  || |||||||| ||||  |||||||| | |||||||      |||||| |||||||||||||||||||| ||||||||    
T  7996327 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcgcgacaccgacgcatataattacactgaattatatgattttctcaaatta 7996426  T
Q  287 ttagcggtgtc 297  Q
    ||||| |||||    
T  7996427 ttagcagtgtc 7996437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 8022474 - 8022364
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacc------tataatcacactgaattatatgattttatcaaatta 286  Q
    ||||||||| ||| ||||||  || |||||||| ||||  |||||||| | |||||||      |||||| |||||||||||||||||||| ||||||||    
T  8022474 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcgcgacaccgacgcatataattacactgaattatatgattttctcaaatta 8022375  T
Q  287 ttagcggtgtc 297  Q
    ||||| |||||    
T  8022374 ttagcagtgtc 8022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 32511674 - 32511769
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagt 341  Q
    |||| |||||| |||||||||||| ||||||| | ||||||||||||||||||  | | |  |||||||||| || | || |||||||||||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagcggtgtcagaggggcaatgtctgtgtcatgtcggtatccgtgcttcatagt 32511769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 16833361 - 16833267
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcat 338  Q
    |||||| | |||| |||||||| ||| ||||||| ||||||||||||  |||||   ||||| |||||||||||||| |||| || |||||||||    
T  16833361 cgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccgtatcagtgcttcat 16833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 1532286 - 1532241
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||    
T  1532286 tataattacactgaattatgtaattttatcaaattattagcggtgt 1532241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 3398664 - 3398596
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||   ||||| ||||| ||||||||    
T  3398664 tataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtg 3398596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 9658925 - 9658856
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||| ||||||| | |||||||||||||||||   ||||| ||||| ||||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtg 9658856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 20371116 - 20371169
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  20371116 cgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtc 20371169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 10770680 - 10770776
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||  ||||    ||||| |||||  ||||||| |||| ||||||||||||||    
T  10770680 cgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcatag 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 19147895 - 19147799
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| |||||| || ||||  ||||||||||| | ||||||||| |||||||  ||||||  ||||||||||||| | |  ||||||||||||||    
T  19147895 cgacacatataattactctgatctatatgattttcttaaattattaacggtgtctttgtgtcactgtctgtgtcgtgtctgcatccgtgcttcatag 19147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 24832645 - 24832593
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    |||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||    
T  24832645 gacacgacacatataattacactaaattataagattttctcaaattattagcg 24832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 31959264 - 31959165
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacac-gacacctataatcacactgaattatatgattttatcaaattattagc 291  Q
    ||||||||||||| || |||  ||  ||||||||||||||||||| || | | ||||| | |||| |||||| ||||| ||||||| |||||||||||||    
T  31959264 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtcgccgacacttgtaattacactgcattatgtgattttttcaaattattagc 31959165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 32320682 - 32320729
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||| ||| |||||||| ||||||||||||||||||| ||||||||    
T  32320682 tataatgacattgaattatgtgattttatcaaattattaacggtgtca 32320729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 32978844 - 32978887
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggaca 236  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggaca 32978887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 34446622 - 34446551
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||||||||||| || |||||||||||| | ||||| ||||||||||| | ||||||  ||||| |||||    
T  34446622 gacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtc 34446551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 7723273 - 7723323
Alignment:
Q  261 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||||||||||||||| ||||||||||||| ||||| | ||||| |||||    
T  7723273 ctgaattatatgattttctcaaattattagcagtgtccacgtgtcagtgtc 7723323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 12696368 - 12696290
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgt 331  Q
    |||| |||||||||||| | ||||| ||||||||||||| |||||   ||||| ||||| |||||||| |||| |||||    
T  12696368 taattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtgtccgt 12696290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 13689500 - 13689550
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||| |||||| ||||  |||| ||||||||||||||||||||||||||||    
T  13689500 acacgtataattacacgaaattgtatgattttatcaaattattagcggtgt 13689550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 25038086 - 25038152
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    |||| ||||| |||||| | ||||| ||||||||||| ||||||||| ||||| || ||||||||||    
T  25038086 taattacactaaattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgt 25038152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 34447378 - 34447416
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  34447378 acactaaattatatgattttatcaaattattaacggtgt 34447416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 6389800 - 6389751
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  6389800 gacacgacacctatgattacactaaattatatcattttctcaaattatta 6389751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 7378032 - 7377979
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| ||| |||||||| ||||||| ||||||| |||||||||||    
T  7378032 cgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtc 7377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 10842585 - 10842532
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| ||| || ||||| |||||| ||||||| |||||||||||||||||||    
T  10842585 cgacacatatgattacactaaattatgtgattttttcaaattattagcggtgtc 10842532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 13364711 - 13364764
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| ||| || |||||||||||||||||||| ||||||||| ||| |||||    
T  13364711 cgacacatatgattacactgaattatatgattttctcaaattataagcagtgtc 13364764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 16766750 - 16766697
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  16766750 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 17168465 - 17168514
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  17168465 gacacgacacctattattacactaaattatatcattttctcaaattatta 17168514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 21924941 - 21924994
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||| |||| || ||||||||||||| |||||    
T  21924941 cgacacatataattacactgaattatttgatattctcaaattattagcagtgtc 21924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 26562742 - 26562689
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||| ||||||| ||||||| ||||| |||||    
T  26562742 cgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtc 26562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 34595187 - 34595090
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||  |||||   |||||  |||| |||||||| || || ||||||||||||||    
T  34595187 cgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgcttcatag 34595090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 7930390 - 7930358
Alignment:
Q  218 cgtgtcccggtgtcggacacgtgacacgacacc 250  Q
    ||||||| |||||||||||||||||||||||||    
T  7930390 cgtgtcctggtgtcggacacgtgacacgacacc 7930358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 8389484 - 8389524
Alignment:
Q  250 ctataatcacactgaattatatgattttatcaaattattag 290  Q
    ||||||| |||||||||||||||||||| | ||||||||||    
T  8389484 ctataattacactgaattatatgattttcttaaattattag 8389524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 31579239 - 31579283
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||    
T  31579239 ataattacactgaattatgtgattttctcaaattattaacggtgt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 21140988 - 21141064
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| |||||| | ||||||| ||| ||||||||    
T  21140988 cgacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtg 21141064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 15902875 - 15902780
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 339  Q
    |||||| |||||| ||||| |||||| |||||||||||||||||||  ||||||    |||| |||||||||||||| |||| | |||||||||||    
T  15902875 cgacacatataattacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtctgtgtcgtgtccgtattcgtgcttcata 15902780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 5236032 - 5235963
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| ||||| |||||||| ||||| | ||||||||||||||||| | ||||| ||||||||||||||    
T  5236032 tataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtg 5235963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 20549844 - 20549771
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| |||||||||||  ||||||| |||||||||||||||||||  |||||| |||| ||||||    
T  20549844 cgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgtatgtgtc 20549771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 26733341 - 26733281
Alignment:
Q  260 actgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||| ||||||| ||||||||||||||||||| | ||||| ||||| ||||||||    
T  26733341 actgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtg 26733281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 17851483 - 17851420
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggt 308  Q
    ||||| |||||| |||||||||||| ||||||| | |||||||||||||| || ||||||||||    
T  17851483 gacacatataattacactgaattatgtgattttctaaaattattagcggtatcgatgtgtcggt 17851420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 42720897 - 42720963
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||| |||||| ||| | |||||| ||||||| ||||||||||||||||||||| ||||| |||||    
T  42720897 gacacatataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtc 42720963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 3520348 - 3520421
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| ||| |||||||||||||||| |||||| |||| ||||||||  |||||  ||||||||||    
T  3520348 cgacacatataattacattgaattatatgattttctcaaatgattatcggtgtcagcgtgtcaatgtctgtgtc 3520421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 23751957 - 23751908
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| |||||||||||||||||    
T  23751957 gacacgacacctatgattacactaaattatatcattttatcaaattatta 23751908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 29787383 - 29787428
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggtgtc 29787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 5548728 - 5548676
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| |||||||||||| ||||||| ||||||||| |||||||||    
T  5548728 gacacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 19206103 - 19206027
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| | | |||||||| ||||||| |||||||||||||||||||   |||| |||||| ||||||||    
T  19206103 cgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtg 19206027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 32308172 - 32308120
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| || ||| |||||||||||| ||||||| |||||||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 49107873 - 49107798
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||| |||||| || |||| |||||||||||||||||||  |||||| | ||| ||||||||    
T  49107873 cgacacatataatcacactcaattatgtg-ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtg 49107798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 598322 - 598275
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    |||||||||||||||| |||  || |||||||||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtg 598275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 9778619 - 9778572
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    ||||||||||||| ||||||  || |||||||||||||||||||||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggacacgtg 9778572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 12289189 - 12289070
Alignment:
Q  220 tgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggt-gtcaatgtgtcggtgtctgtgtcg 318  Q
    |||||| | |||| |||| |||||||||||  |||||  ||||||||||| ||||||| ||||||||||||| || | |   ||||||||||| |||| |    
T  12289189 tgtcccagagtcgaacacatgacacgacac--ataattccactgaattatgtgattttctcaaattattagcagtggccggcgtgtcggtgtccgtgttg 12289092  T
Q  319 tggccgtctccgtgcttcatag 340  Q
    || | || ||||||||||||||    
T  12289091 tgtctgtatccgtgcttcatag 12289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 5938529 - 5938480
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    ||||| ||||||||||| | |||||||||| | |||||||||||||||||    
T  5938529 gacacaacacctataattatactgaattatgttattttatcaaattatta 5938480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 11831476 - 11831423
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcg 306  Q
    |||| ||||| |||||||||||||| ||||||||||||  ||||| ||||||||    
T  11831476 taattacactaaattatatgattttttcaaattattagttgtgtcgatgtgtcg 11831423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 11890933 - 11890970
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattatta 289  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  11890933 ataattacactgaattatatgattttttcaaattatta 11890970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 13300454 - 13300417
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattag 290  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  13300454 taattacactgaattatatgattttttcaaattattag 13300417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 14729746 - 14729697
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatg 301  Q
    ||||| |||||||||||  ||||||| |||||||||||||||| ||||||    
T  14729746 ataattacactgaattacgtgattttctcaaattattagcggtttcaatg 14729697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 18215167 - 18215239
Alignment:
Q  218 cgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagc 291  Q
    |||||||||||||||||||||  || |||||| | |||  |||||| ||||| ||||||| |||||||||||||    
T  18215167 cgtgtcccggtgtcggacacgacac-cgacacttgtaactacactgcattatgtgattttttcaaattattagc 18215239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 19992054 - 19992001
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||| ||| ||||||| ||||||||||||| |||||    
T  19992054 cgacacttataattacactgaaatatgtgattttctcaaattattagctgtgtc 19992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 24339695 - 24339642
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  24339695 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 29812666 - 29812715
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  29812666 gacacgacacctatgattacactaaattatatcattttctcaaattatta 29812715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 2424659 - 2424619
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcg 292  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 4017797 - 4017897
Alignment:
Q  241 acacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcata 339  Q
    ||||||||| ||| || ||||| ||||||||  |||| ||||||||||| | |||||   ||||||||||| |||||||| || || || ||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtccagtgtctgtgcttcata 4017896  T
Q  340 g 340  Q
    |    
T  4017897 g 4017897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 8239053 - 8239101
Alignment:
Q  241 acacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    ||||||||| |||||| ||||||||||||| |||||| | |||||||||    
T  8239053 acacgacacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 11722121 - 11722197
Alignment:
Q  261 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttc 336  Q
    ||||||||| ||||||| ||||||| |||||||||||   ||||| ||||| |||||||| || || ||||||||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgcttc 11722197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 22602716 - 22602792
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| |||||||||||| ||||||| |||||| |||  |||||||   ||||| ||| ||||||||||    
T  22602716 cgacacatataattacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtgcctgtgtcgtg 22602792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 22868094 - 22868042
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| |||||||||||| ||||||| ||| |||||||| ||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtc 22868042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 23191940 - 23191896
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||| ||| ||||||| |||||||||||||||||||    
T  23191940 taattacactgaaatatgtgattttctcaaattattagcggtgtc 23191896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 25481946 - 25481902
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  25481946 taattacactgaattatgtgattttttcaaattattagctgtgtc 25481902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 26329388 - 26329464
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| |||||||||| | || |||| ||||||||||| || ||||   ||||| ||||||||||||||    
T  26329388 cgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtg 26329464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 27945094 - 27945018
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| | |||| |||||||||||| | ||||| |||||||||||| ||||||   ||||| ||||| ||||||||    
T  27945094 cgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtg 27945018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 43250050 - 43249950
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcat 338  Q
    |||||||||| |||||| |||||| ||||| | ||||| ||||||||||| | |||||   ||||| ||||| ||||| || || || ||||||||||||    
T  43250050 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtgcttcat 43249951  T
Q  339 a 339  Q
    |    
T  43249950 a 43249950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 135293 - 135393
Alignment:
Q  218 cgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    ||||||| |||||||||||||  || |||||| |||||| |||| ||||||| ||||||| ||||||||||||| |||||  ||||| ||||||||||||    
T  135293 cgtgtcctggtgtcggacacgacac-cgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgttggtgtctgtgtc 135391  T
Q  318 gt 319  Q
    ||    
T  135392 gt 135393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 23870571 - 23870632
Alignment:
Q  250 ctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||    
T  23870571 ctataatcacactgaattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtc 23870632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 26508163 - 26508060
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatagtgt 343  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| || ||||| ||||| |||| ||||| |||||||| ||    
T  26508163 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcatagcgt 26508064  T
Q  344 gtaa 347  Q
    ||||    
T  26508063 gtaa 26508060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 8383310 - 8383257
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  8383310 cgacacttataattacactgaattatatgattttctcaaattattagcggtgtc 8383257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 34307782 - 34307859
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||  |||||||||||    
T  34307782 gacacgacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcagcgtgttcgtgtctgtgtc 34307859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 17005625 - 17005677
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||    
T  17005625 cgacacttataattacactgaattatatgattttatcaaattattagtggtgt 17005677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 13620744 - 13620823
Alignment:
Q  219 gtgtcccggtgtcggacacgtgacac-gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||||||||||||||||||||||| ||||| |||||   |||||||| || ||||||| |||||||| ||||||||||    
T  13620744 gtgtcccggtgtcggacacgtgacacagacacatataactgcactgaatcatgtgattttctcaaattactagcggtgtc 13620823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 7928503 - 7928450
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  7928503 cgacacatataattacactgaattatgtgattttttcaaattattagcggtgtc 7928450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 11658868 - 11658787
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgt 325  Q
    |||||| |||||||||||||||||||  |||||| ||||||||||| || |||   |||||| |||||||||||||| ||||    
T  11658868 cgacacatataatcacactgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgtcgtgtccgt 11658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 8039841 - 8039893
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||||||||||||| ||||| ||||||||||||||||||    
T  8039841 cgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 15544727 - 15544679
Alignment:
Q  263 gaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  15544727 gaattatgtgattttatcaaattattagcggtgtcaacgtgtcagtgtc 15544679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 29112293 - 29112353
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||| |||||||||||||||||||| |||||| ||||| |||||||| ||||| |||||    
T  29112293 tataattacactgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtc 29112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 26492220 - 26492307
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||| |||||||||| ||||||||| |||||||||||||  ||||   ||||| ||||| |||||||| |||| | ||||||||||||    
T  26492220 taattacactgaattgtatgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccgtattcgtgcttcatag 26492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 29508497 - 29508451
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattag 290  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  29508497 cgacacatataattacactgaattatatgattttttcaaattattag 29508451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 29508564 - 29508522
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggac 235  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  29508564 aagcacggacacttcttggattagacgtgtcccggtgtcggac 29508522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 11665997 - 11665921
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| ||||| |||| | |||||||||||||||||||||| ||||  |||||  |||| |||||||||    
T  11665997 cgacacatataattacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgtgtgtgtcgtg 11665921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Original strand, 14223841 - 14223940
Alignment:
Q  225 cggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccg 324  Q
    |||||||||||||  |||||||||| ||| |  ||||| ||||||||  |||| ||||||||||| | |||||   |||||||||||||||||||| |||    
T  14223841 cggtgtcggacacc-gacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtccg 14223939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 1550192 - 1550141
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||||||||| |||||||||  | ||||||| ||||||||||||||||||    
T  1550192 gacacctataattacactgaatagtgtgattttttcaaattattagcggtgt 1550141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 25892530 - 25892468
Alignment:
Q  226 ggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| ||||| ||||||||||||||| || |||||||||||||| ||||| | |||||||||    
T  25892530 ggtgtccgacac-tgacacgacacctatgattacactgaattatatcattttcttaaattatta 25892468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 10690275 - 10690321
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||||| ||||||| ||| |||||||||||||||    
T  10690275 tataattacactgaattatgtgattttctcagattattagcggtgtc 10690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 21257008 - 21257058
Alignment:
Q  260 actgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgt 310  Q
    |||||||||| ||||||| ||||||||||||| ||||||  ||||||||||    
T  21257008 actgaattatgtgattttttcaaattattagctgtgtcatcgtgtcggtgt 21257058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 25652032 - 25652082
Alignment:
Q  239 tgacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| ||||||||||  |||||||||||||| ||||| |||||||||||    
T  25652032 tgacacaacacctataactacactgaattatatcattttctcaaattatta 25652082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 40993341 - 40993432
Alignment:
Q  244 cgacacctataatcacactgaattatatga-ttttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| |||||| |||||||||||| ||| |||| | ||||||||||||||||| |      |||||| |||||||| |||| ||||||||||||||    
T  40993341 cgacacatataattacactgaattatgtgattttttttaaattattagcggtgtcga------ggtgtccgtgtcgtgtccgtatccgtgcttcatag 40993432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 49505161 - 49505227
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||| |||||| ||||| |||||| ||||||| |||||||||||||||| ||   |||||||||||    
T  49505161 gacacatataattacactaaattatgtgattttctcaaattattagcggtctctgcgtgtcggtgtc 49505227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 15864890 - 15864841
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  15864890 gacacgacacctatgattacactaaattatatcattttttcaaattatta 15864841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 15999957 - 16000002
Alignment:
Q  195 gcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    ||||||||||| ||||||  || |||||||||||||||||||||||    
T  15999957 gcacggacactccttggattaggcgtgtcccggtgtcggacacgtg 16000002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 16192758 - 16192819
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcgg 307  Q
    |||| |||||| |||||||||||| | ||||| ||||||||||| |||||||  ||||||||    
T  16192758 acacatataattacactgaattatgttattttctcaaattattaacggtgtcggtgtgtcgg 16192819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 22774076 - 22774149
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| |||||||| ||| ||| ||| || ||||||||| |||||| | ||||| |||||||||||    
T  22774076 cgacacttataattacactgaaatatgtgactttgtctaattattagtggtgtcgacgtgtctgtgtctgtgtc 22774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 25948895 - 25948940
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagc 291  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||    
T  25948895 acacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 35994740 - 35994796
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||||||| | |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  35994740 gacacgacacttgtaattacactgaattatgtgatttt-tcaaattattagctgtgtc 35994796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 4987306 - 4987350
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  4987306 taattacactgaattatgtgattttttcaaattattagctgtgtc 4987350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 11610623 - 11610522
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    ||||||||||||| ||  ||  || ||||||||| |||||||||||  ||  ||||| | |||  |||||||||||| ||||||| | ||||||||||||    
T  11610623 aagcacggacactcctcagattaggcgtgtcccgatgtcggacacg--acttgacacttgtaactacactgaattatgtgatttttttaaattattagcg 11610526  T
Q  293 gtgt 296  Q
    ||||    
T  11610525 gtgt 11610522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 15796309 - 15796345
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattatta 289  Q
    |||| |||||||||||||||||||| |||||||||||    
T  15796309 taattacactgaattatatgattttttcaaattatta 15796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 24205043 - 24205123
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||| |||||| |||||| ||||| | ||||| ||||||||||| | |||||   ||||| ||||| ||||||||    
T  24205043 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtg 24205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 25064954 - 25064886
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||| ||||| |||||| ||||||| |||||| ||||||||||||   |||||  |||||||||||||    
T  25064954 ataattacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtg 25064886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 32804547 - 32804599
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||| ||||| |||||| ||||||| ||||||||||| |||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacggtgtc 32804599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 51206373 - 51206413
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  51206373 acactgaattatgtgattttttcaaattattagctgtgtca 51206413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 24362209 - 24362283
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    ||||| |||||| |||||||||||| ||||| | |||||||||||||||||||   |||||||||||||||||||    
T  24362209 gacacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgt 24362283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 34897138 - 34897071
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 12570514 - 12570590
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||| ||||| |||||| || |||| | ||||||||||| ||||||| |||||||||||||| |||||    
T  12570514 cgacacatataattacacttaattatgtgtttttcttaaattattagcagtgtcaacgtgtcggtgtctgtatcgtg 12570590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 39820486 - 39820406
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||   | ||||  ||||||||||||||||||||    
T  39820486 gacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtctgtgtcgtg 39820406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 24669486 - 24669399
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgt 331  Q
    |||||| | |||| |||||||||||| | ||||  ||||||||||| ||||||||  ||||| |||||||||||||| |||| |||||    
T  24669486 cgacacttgtaattacactgaattatgtaatttcctcaaattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccgtgtccgt 24669399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 3025603 - 3025557
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagc 291  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||||    
T  3025603 gacacctataattacactgaattatgtgattttctcaaattattagc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 3658203 - 3658133
Alignment:
Q  241 acacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||||||||||| || |||||||| || || ||||| ||||||||||| | ||||| |||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 11927092 - 11927137
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||    
T  11927092 cgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 12606835 - 12606888
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| ||| |||||||||||||||| ||||||||||||| |||||    
T  12606835 cgacacatataattacattgaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 18067954 - 18067994
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  18067954 acactgaattatgtgattttctcaaattattagcggtgtca 18067994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 39954292 - 39954352
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||||   |||||||||||    
T  39954292 tataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 4673440 - 4673507
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| |||||||||| ||||||||| ||||||||||| | |||||   ||||| ||||||||||||||    
T  4673440 taattacactgaattttatgattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtg 4673507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 8343360 - 8343293
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| ||||| |||||| ||||||| |||||||||||||  ||||  |||||||||||| ||||||||    
T  8343360 taattacactaaattatgtgattttttcaaattattagctatgtcggtgtgtcggtgtcagtgtcgtg 8343293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 4611580 - 4611534
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||||| | ||||| |||||||||||||||||||    
T  4611580 tataattacactgaattatgttattttctcaaattattagcggtgtc 4611534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 20679401 - 20679471
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 314  Q
    |||||| |||||| |||||||| ||| ||||||| |||||||||||| |||||| |  |||| ||||||||    
T  20679401 cgacacttataattacactgaactatgtgattttctcaaattattaggggtgtcgacatgtcagtgtctgt 20679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 25566894 - 25566840
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||||    
T  25566894 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtca 25566840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 36934721 - 36934647
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| |||||| ||| |||||||| ||||||| || |||||||||||||||| | ||||  ||||| ||||||||    
T  36934721 acacatataattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgtcgtg 36934647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 11944718 - 11944673
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| |||||| ||||||| |||| |||||||||||||||||||    
T  11944718 cgacacatataattacactgagttatgtgattttatcaaattatta 11944673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 12570747 - 12570808
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtct 312  Q
    |||||| ||||| ||||||  | |||| | ||||||||||||||||||| ||||||||||||    
T  12570747 tataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtcggtgtct 12570808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 13844602 - 13844655
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| ||||| |||||| ||||||| ||||||||||||| |||||    
T  13844602 cgacacatataattacactcaattatgtgattttctcaaattattagcagtgtc 13844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 31236583 - 31236636
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| ||| |||||||| ||||||| ||||||||||||| |||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattattagcagtgtc 31236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 2572062 - 2572138
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| | |||| ||||| |||||| ||||||| ||||||||||||  ||||| | |||||||| || ||||||||    
T  2572062 cgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtg 2572138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 18069155 - 18069191
Alignment:
Q  262 tgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  18069155 tgaattatttgattttctcaaattattagcggtgtca 18069191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 22652101 - 22652057
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacac 237  Q
    ||||||||||||| || |||  |||||||||||||||||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcccggtgtcggacac 22652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 22850416 - 22850321
Alignment:
Q  224 ccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||||  ||||| || ||||||||| ||| | |||||| |  |||| ||||||||| | |||||| | ||||||||||||||| |||||    
T  22850416 ccggtgtcggacat-tgacatgaaacctataattacatttaattatgtctttttctcaaattatcatcggtgttagtgtgtcggtgtctgtttcgtg 22850321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 27101566 - 27101515
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||||||||  |||| |||||| ||||||| |||||||||||||||||||    
T  27101566 gacacctataatt-cactaaattatgtgattttttcaaattattagcggtgtc 27101515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 29776082 - 29775994
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 339  Q
    |||||| | |||||||||  ||||||| ||||||||||||| ||||| |  ||||  |||| |||||||| |||| | |||||||||||    
T  29776082 tataattatactgaattacgtgattttctcaaattattagcagtgtcgacttgtcaatgtccgtgtcgtgaccgtattcgtgcttcata 29775994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 34201059 - 34201123
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtg 315  Q
    |||||| ||| |||||||| | ||||| |||||||||||   |||||||||||||||| ||||||    
T  34201059 tataattacattgaattatgtcattttctcaaattattattagtgtcaatgtgtcggtatctgtg 34201123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 34223000 - 34222952
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    |||||| |||||| ||||| |||||| ||||||||| ||||||||||||    
T  34223000 cgacacatataattacacttaattatgtgattttattaaattattagcg 34222952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 5467980 - 5468034
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggt 294  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  5467980 gacacgacacctataattacactgaattatgtgattttatcaaattattatcggt 5468034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 25863262 - 25863181
Alignment:
Q  239 tgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||||||||| |||||| |||||||||||||| ||||| |||||||||||    |||| | |||||| |||||||||||||    
T  25863262 tgacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgatgtctgtgtcgtg 25863181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 28588680 - 28588733
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||    
T  28588680 cgacacctataattacactgaattatgtgattttctcaaattattaccggtgtc 28588733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 12927700 - 12927637
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 314  Q
    |||||| ||||| |||||||||||||| |||||||||||||| ||||  |||||| ||||||||    
T  12927700 tataattacactaaattatatgattttctcaaattattagcgatgtcggtgtgtccgtgtctgt 12927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 2437025 - 2436878
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    ||||||| ||||| || |||  || ||||||  |||||||||||||  || |||||| ||||||||||  ||||||| |||||||  |||||||||||||    
T  2437025 aagcacgaacactcctcggattaggcgtgtcttggtgtcggacacgacac-cgacacatataatcacaacgaattatgtgatttttgcaaattattagcg 2436927  T
Q  293 gtgtcaatgtgtcggtgtctgtgtc--gtggccgtctccgtgcttcatag 340  Q
    |||||   ||||| ||||| |||||  ||| |||| ||||||||||||||    
T  2436926 gtgtcggcgtgtcagtgtc-gtgtccggtgtccgtatccgtgcttcatag 2436878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 3966556 - 3966503
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||| | ||||||| |||||||||||||||||||    
T  3966556 cgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtc 3966503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 10022678 - 10022625
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgt 304  Q
    |||||| |||||||||||||||||||||||||||||| | || |||| ||||||    
T  10022678 tataattacactgaattatatgattttatcaaattatcaacgatgtcgatgtgt 10022625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 14574051 - 14574131
Alignment:
Q  239 tgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||| ||||||||| |||||||||||||| |||| ||||||||||||   |||||   |||||||||| |||||||||    
T  14574051 tgacacga-acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgtttgtgtcgtg 14574131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 23221036 - 23220983
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| ||| || ||||| |||||| |||||||||||||||||||||||||||    
T  23221036 cgacacatatgataacactaaattatgtgattttatcaaattattagcggtgtc 23220983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 6471897 - 6471949
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||| |||||| |||||||||||| ||||||| ||||||||||||| ||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattattagccgtgtca 6471949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 27144515 - 27144443
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    ||||| |||||| ||||| |||||| ||||||  |||||||||||||||||||   ||||| |||||||||||    
T  27144515 gacacatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgtctgtgtc 27144443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 30502394 - 30502446
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||||||||||  ||||||| ||||||||||||||||||    
T  30502394 cgacacatataattacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 30542737 - 30542789
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||||||||||  ||||||| ||||||||||||||||||    
T  30542737 cgacacatataattacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 39205931 - 39205863
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgt 314  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||||| ||||| | ||||| ||||||||    
T  39205931 acacatataattacacctaattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtctgt 39205863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 39695956 - 39696058
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    |||||| |||||| || |||  || ||||||||| ||||||||||  |||||||||||||| || ||||| |||||||| ||||| ||||||||||  ||    
T  39695956 aagcaccgacactcctaggattaggcgtgtcccg-tgtcggacacc-gacacgacacctatgattacactaaattatatcattttctcaaattattgtcg 39696053  T
Q  293 gtgtc 297  Q
    |||||    
T  39696054 gtgtc 39696058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 23015995 - 23016073
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc--aatgtgtcggtgtctgtgtcgtg 320  Q
    ||||||||||||| |||||||||||| ||||||| |||||| |||| || ||||  |  ||||||||||| ||||||||    
T  23015995 cgacacctataattacactgaattatgtgattttctcaaatgattaacgatgtcagagagtgtcggtgtccgtgtcgtg 23016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 34879403 - 34879352
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtg 295  Q
    |||||| ||| || |||||||||||||||||||| ||||||| |||||||||    
T  34879403 cgacacatattattacactgaattatatgattttctcaaatttttagcggtg 34879352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 42488068 - 42488135
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| ||| |||||||||| ||||||| ||||||| | ||||||| | ||||| ||||||||||||||    
T  42488068 taattacattgaattatataattttattaaattatcaacggtgtcgacgtgtcagtgtctgtgtcgtg 42488135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 17593735 - 17593785
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatg 301  Q
    |||||| |||||||||||  ||||||| |||||||||||||||| ||||||    
T  17593735 tataattacactgaattacgtgattttctcaaattattagcggtttcaatg 17593785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 25817547 - 25817493
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaa 299  Q
    ||||| |||||||| ||||||| |||||||||| | ||||||||||| |||||||    
T  25817547 gacacatataatcatactgaatcatatgatttttttaaattattagcagtgtcaa 25817493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 39698585 - 39698527
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||| |||||||||||| ||||||| ||||||||||||| ||||||  ||||| |||||    
T  39698585 taattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtc 39698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 7175045 - 7175098
Alignment:
Q  264 aattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| ||||||| ||||||||||| ||||||| ||||||| ||||| |||||    
T  7175045 aattatgtgattttctcaaattattaacggtgtcgatgtgtcagtgtccgtgtc 7175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 7997168 - 7997217
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||| |||||| |||||| ||||||| ||||| |||||||||||    
T  7997168 gacacgacacttataattacactgtattatatcattttctcaaattatta 7997217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 19438382 - 19438329
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||||||||| ||||||| ||||||||| |||| |||| ||||||| |||||    
T  19438382 acactgaattatgtgattttctcaaattatcagcgatgtcgatgtgtcagtgtc 19438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 21191062 - 21191115
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  21191062 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 21191115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 32630742 - 32630795
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    ||||| |||||| ||| |||||||||| ||||| ||||||||||| ||||||||    
T  32630742 gacacatataattacattgaattatataattttctcaaattattatcggtgtca 32630795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 41091263 - 41091316
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||| ||||||| |||||| |||||| |||||    
T  41091263 cgacacatataattacactgaattatgtgattttctcaaatcattagcagtgtc 41091316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 43554578 - 43554529
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  43554578 gacacgacacctatgattacactaaattatatcattttctcaaattatta 43554529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 19168828 - 19168900
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    ||||| ||| || ||||||||| || |||||||||||||||| |||||||||   |||||| ||||| |||||    
T  19168828 gacacatatgattacactgaataatgtgattttatcaaattaatagcggtgtaggtgtgtcagtgtccgtgtc 19168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 21576751 - 21576803
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||    
T  21576751 cgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgt 21576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 27932279 - 27932235
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 36838596 - 36838544
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| ||||| |||||| | ||||| ||||||||||||||||||    
T  36838596 cgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 38464344 - 38464416
Alignment:
Q  219 gtgtcccggtgtcggacacgtgacac-gacacctataatcacactgaattatatgattttatcaaattattag 290  Q
    |||||||||||||||||| ||| ||| ||||| ||||||  || ||||| || ||||||| ||||||||||||    
T  38464344 gtgtcccggtgtcggacatgtgccactgacacttataatttcaatgaataatgtgattttctcaaattattag 38464416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 34691811 - 34691861
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggt 294  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  34691811 cgacacatataattacactgaattatatgattttatcaaattattagcggt 34691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 34714223 - 34714273
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggt 294  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  34714223 cgacacatataattacactgaattatatgattttatcaaattattagcggt 34714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 37411250 - 37411303
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  37411250 cgacacatataatcacactgaattatgtgattttctcaaattattagcggtgtc 37411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 12940950 - 12941017
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||| ||||| ||||| ||||||||    
T  12940950 taattacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtcgtg 12941017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 21616813 - 21616739
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||||||||||   ||||| ||||| ||||||||    
T  21616813 acacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtg 21616739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 23718079 - 23718006
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| |||||||||||| ||| ||| |||||||||||||||||||  |||||| ||||| |||||    
T  23718079 cgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 23718006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 24105751 - 24105678
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| |||||||||||| ||| ||| |||||||||||||||||||  |||||| ||||| |||||    
T  24105751 cgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtc 24105678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 20539680 - 20539756
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| | |||| ||||| |||||||||||||| ||||||||||||| ||||| | ||||| ||||| ||||||||    
T  20539680 cgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtg 20539756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 30404856 - 30404952
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||| | |||||   ||||| ||||| ||||| || |||| ||||||||||||||    
T  30404856 cgacacttgtaattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatag 30404952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 27286299 - 27286394
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||   || || ||||| || ||||| | || ||||||||||||||    
T  27286299 gacacctataattacacttaattatgtgatcttatcaaattattagcgttgtcggcgtatcagtgtccgtatcgtgtctgtgtccgtgcttcatag 27286394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 29970555 - 29970622
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    |||||| ||| || |||||||| |||  |||||| ||||||||||||||||||||||||||| |||||    
T  29970555 cgacacatatgattacactgaactatgcgattttctcaaattattagcggtgtcaatgtgtcagtgtc 29970622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 28677955 - 28677909
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  28677955 tataattacactgaattatgtgattttttcaaattattagcggtgtc 28677909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 31808129 - 31808063
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||| |||||| |||||||||||| ||||||| | |||||||||||||||||  |||||| |||||    
T  31808129 gacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgtc 31808063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 44860373 - 44860319
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||| |||||| ||||||||||||  |||||| ||||||||||||||||||||    
T  44860373 cgacacatataattacactgaattatgcgattttctcaaattattagcggtgtca 44860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 23354654 - 23354731
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||||||||||| || ||||| |||||||| ||||| ||||||||||| | ||||||   |||||||||| |||||    
T  23354654 gacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtc 23354731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 25544538 - 25544489
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||||||||||| || |||||||||||||| ||||| |||||||||||    
T  25544538 gacacgacacctatgattacactgaattatatcattttctcaaattatta 25544489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 42832237 - 42832335
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    ||||| ||||||| ||||||  || |||||||||| |||||||||      |||||| |||||| |||||||| ||| | ||||| ||||||||||||||    
T  42832237 aagcaaggacactccttggattaggcgtgtcccggagtcggacac------cgacacttataattacactgaaatatgtaattttctcaaattattagcg 42832330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 21782832 - 21782900
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    ||||| |||||||||||| ||||||| ||||||||||||| |||||   ||||| |||| |||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtg 21782900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 28412395 - 28412351
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattattaacggtgt 28412351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 22084852 - 22084899
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtcaatgtgtc 305  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  22084852 acactgaattatatgattttctcaaattattaacggtgttgatgtgtc 22084899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 24975345 - 24975384
Alignment:
Q  258 acactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  24975345 acactgaattatacgattttctcaaattattagcggtgtc 24975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 36756350 - 36756425
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    |||||| |||||| |||||||||||| | ||||  ||||||||||||  ||||| | ||||| |||||||||||||    
T  36756350 cgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgt 36756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 18622690 - 18622613
Alignment:
Q  219 gtgtcccggtgtcggacacgtgacacgacacc------tataatcacactgaattatatgattttatcaaattattag 290  Q
    |||||||||||| |||||  ||||||||||||      |||||| |||||||||||| ||||||||| ||||||||||    
T  18622690 gtgtcccggtgtaggacatatgacacgacaccaacacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 1328015 - 1327978
Alignment:
Q  260 actgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  1328015 actgaattttatgattttctcaaattattagcggtgtc 1327978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 16069268 - 16069313
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||||||||||||||||| | ||||||||| |||||||    
T  16069268 ataattacactgaattatatgatttttttaaattattaacggtgtc 16069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 18276566 - 18276521
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||| |||||||||||  ||||||| |||||||||||||||||||    
T  18276566 ataattacactgaattaagtgattttctcaaattattagcggtgtc 18276521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 19574035 - 19573978
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||| |||||||||||| | ||||| | ||||||||| |||||||    
T  19574035 gacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtc 19573978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 23058387 - 23058432
Alignment:
Q  191 gtaagcacggacacttcttggacgagacgtgtcccggtgtcggaca 236  Q
    |||||||||||||||||| |||  || |||||||||||||||||||    
T  23058387 gtaagcacggacacttctcggattaggcgtgtcccggtgtcggaca 23058432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 30527601 - 30527646
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattatta 289  Q
    |||||| |||||| ||||| |||||||||||||| |||||||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 4882702 - 4882774
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgt 316  Q
    |||||| | |||| |||||||||||||| ||||| |||||| ||||||||| || | ||||| || |||||||    
T  4882702 cgacacttgtaattacactgaattatatcattttttcaaataattagcggtatcgacgtgtcagtatctgtgt 4882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 6045940 - 6045972
Alignment:
Q  262 tgaattatatgattttatcaaattattagcggt 294  Q
    |||||| ||||||||||||||||||||||||||    
T  6045940 tgaattgtatgattttatcaaattattagcggt 6045972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 8950338 - 8950374
Alignment:
Q  261 ctgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||||||| |||||| |||||||||||||||||||    
T  8950338 ctgaattataagattttttcaaattattagcggtgtc 8950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 10535762 - 10535818
Alignment:
Q  241 acacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    ||||||||| ||| || |||||||||||| | ||||| ||||||||||| |||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 18841019 - 18841115
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| ||||| |||||| | ||||| ||||||||||||  ||||||  ||||| |||||  ||||||| |||| | ||||||||||||    
T  18841019 cgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccgtatacgtgcttcatag 18841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 25080946 - 25080902
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtg 295  Q
    |||||| ||||||| |||| |||| ||||||||||||||||||||    
T  25080946 tataattacactgacttatgtgatcttatcaaattattagcggtg 25080902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 31018643 - 31018591
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||||||||||| ||||| ||| || ||||||| | ||||||||||||||||    
T  31018643 cgacacctataattacactaaatcatgtgattttctgaaattattagcggtgt 31018591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 38355893 - 38355933
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaat 284  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  38355893 cgacacatataatcacactgaattatgtgattttctcaaat 38355933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 39279728 - 39279676
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| |||||| |||||||||||| ||||||| ||| ||||||| ||||||    
T  39279728 cgacacatataattacactgaattatttgattttctcatattattaacggtgt 39279676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 39323308 - 39323264
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  39323308 taattacactgaattatgtaattttgtcaaattattagcggtgtc 39323264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 37203366 - 37203264
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcg 292  Q
    |||||||||||||||| |||  ||||||||||||||||||||| |  ||||| |||| | |||| ||||| |||||| | ||||| |||||||||||||     
T  37203366 aagcacggacacttctcggattagacgtgtcccggtgtcggaccc--gacactacacttgtaattacactaaattatgtcattttttcaaattattagcc 37203269  T
Q  293 gtgtc 297  Q
    |||||    
T  37203268 gtgtc 37203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 22440602 - 22440702
Alignment:
Q  240 gacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcata 339  Q
    |||||| ||| |||||| |||||||||||| ||||||| ||||||||||| ||||||| |||| || |||||  ||||||| | || |||||| ||||||    
T  22440602 gacacgtcacatataattacactgaattatgtgattttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgtgtctgtatccgtgtttcata 22440701  T
Q  340 g 340  Q
    |    
T  22440702 g 22440702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 24343578 - 24343484
Alignment:
Q  225 cggtgtcggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||||||||  ||||||||||||||||| |||||||||||| | ||||| ||||||||||| | |||||   ||||||| ||| ||||||||    
T  24343578 cggtgtcggacacc-gacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtg 24343484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 3712458 - 3712568
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgt----gacac--gacacctataatcacactgaattatatgattttatcaaatta 286  Q
    ||||||||||||| ||  ||  || ||||||||||||||||||||||    |||||  ||||| |||||| ||| ||||||| |||||||| ||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacacgtctacgacaccagacacatataattacattgaattacatgattttctcaaatta 3712557  T
Q  287 ttagcggtgtc 297  Q
    |||||||||||    
T  3712558 ttagcggtgtc 3712568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 56488533 - 56488583
Alignment:
Q  261 ctgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtc 311  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  56488533 ctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtc 56488583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 14126104 - 14126193
Alignment:
Q  231 cggacacgtgacacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||||| |||| ||||| |||||| |||||||||||| ||| ||||||||||||||| | |||||   ||||  ||||||||||||||    
T  14126104 cggacacgagacatgacacttataattacactgaattatgtgactttatcaaattattaacagtgtcggcgtgttagtgtctgtgtcgtg 14126193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 35952588 - 35952670
Alignment:
Q  215 agacgtgtcccggtgtcggacacgtgacacgacacc------tataatcacactgaattatatgattttatcaaattattagc 291  Q
    |||||||||  ||||||||||||| ||||||||||       |||||| ||| ||||||||||||||||||||||||||||||    
T  35952588 agacgtgtcttggtgtcggacacgcgacacgacactgatacatataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 7012115 - 7012025
Alignment:
Q  248 acctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcat 338  Q
    |||||| ||||||||||||||| | ||||| ||||||||||| |||||||   ||||||||||| ||||| || | || || |||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtctgtgtctgtgcttcat 7012025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 8423731 - 8423777
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttctcaaattattagcggtgtc 8423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 56257978 - 56257928
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgt 302  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagcagtgtccatgt 56257928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 40613503 - 40613450
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  40613503 cgacacatataattacactgaattatgtgattttctcaaaatattagcggtgtc 40613450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 35161017 - 35160982
Alignment:
Q  282 aattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||||||||||||||||||||||||||| |||||    
T  35161017 aattattagcggtgtcaatgtgtcggtgtccgtgtc 35160982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 36635375 - 36635325
Alignment:
Q  246 acacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||| |||||| |||||||||||| ||||||| |||||||||||| |||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgt 36635325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 40179649 - 40179715
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||||||||| ||||||| ||||| |||||  |||||||| ||||| ||||| |||||    
T  40179649 tataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgtc 40179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 54580029 - 54580075
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattag 290  Q
    |||||| |||||| |||||||||||| ||||||| ||||||||||||    
T  54580029 cgacacttataattacactgaattatgtgattttttcaaattattag 54580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 999354 - 999407
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||||| |||||| ||||| |||||||||||||  |||||||||||||| ||||    
T  999354 cgacacatataattacactaaattatatgatttactcaaattattagcgatgtc 999407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 19230312 - 19230381
Alignment:
Q  241 acacgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgt 310  Q
    |||||||||||||||| ||| |||||||| | ||||| ||||||||||| |  |||| ||||||| ||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgt 19230381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 21945556 - 21945459
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||| | ||||| ||||||||||||| |||||    |||| ||||||||||| || || || ||||||||||||||    
T  21945556 cgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtgcttcatag 21945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 26504305 - 26504378
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    |||||| |||||| |||||||| ||| ||||||| | ||||||||||| ||||| |||| || ||||| |||||    
T  26504305 cgacacatataattacactgaactatttgattttcttaaattattagcagtgtcgatgtttcagtgtccgtgtc 26504378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 28964263 - 28964312
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtcaatgt 302  Q
    |||| |||||||||||| ||||||| |||||||||||||  |||||||||    
T  28964263 taattacactgaattatgtgattttttcaaattattagctatgtcaatgt 28964312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 49431079 - 49430982
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttat-caaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggccgtctccgtgcttcatag 340  Q
    |||||| | |||| |||||||||||| ||||||| | |||||||||||| |||||   |||||  |||| | |||||| |||| ||||||||||||||    
T  49431079 cgacacttttaattacactgaattatgtgatttttttcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcatag 49430982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 903968 - 903924
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtg 295  Q
    |||||| |||||||||||| ||||||| ||||||||||| |||||    
T  903968 tataattacactgaattatgtgattttctcaaattattaacggtg 903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 16189754 - 16189710
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    ||||| |||||||||||| ||||||| ||||||| ||||||||||    
T  16189754 ataattacactgaattatgtgattttctcaaatttttagcggtgt 16189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 21873315 - 21873359
Alignment:
Q  201 acacttcttggacgagacgtgtcccggtgtcggacacgtgacacg 245  Q
    ||||| ||||||  |||||||||||||||||||||||||| ||||    
T  21873315 acactccttggattagacgtgtcccggtgtcggacacgtgtcacg 21873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 21929176 - 21929220
Alignment:
Q  201 acacttcttggacgagacgtgtcccggtgtcggacacgtgacacg 245  Q
    ||||| ||||||  |||||||||||||||||||||||||| ||||    
T  21929176 acactccttggattagacgtgtcccggtgtcggacacgtgtcacg 21929220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 29205497 - 29205445
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgt 296  Q
    |||||| | |||| |||||||||||| ||||||| ||||||||||||| ||||    
T  29205497 cgacacttgtaattacactgaattatgtgattttttcaaattattagccgtgt 29205445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 30838256 - 30838216
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagc 291  Q
    |||||| ||||| |||||||| |||||||||||||||||||    
T  30838256 tataattacactaaattatataattttatcaaattattagc 30838216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 38847027 - 38847071
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| ||||||||| |||||||||| ||||||||||||| |||||    
T  38847027 taattacactgaataatatgattttttcaaattattagctgtgtc 38847071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 90889 - 90820
Alignment:
Q  251 tataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| |||||||||||||||||||| |||||||||||  |||||   |||||| ||||||||||||||    
T  90889 tataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgtcgtg 90820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 1087 - 1013
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgt 319  Q
    ||||| |||| | |||||||||||| | ||||| |||||||||||||||||||  |||||| | |||||||||||    
T  1087 gacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgtcagcgtctgtgtcgt 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 44531 - 44585
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtca 298  Q
    |||||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||    
T  44531 cgacacatataattacactgaattatgtgattttctcaaatttttagcggtgtca 44585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 53303 - 53258
Alignment:
Q  195 gcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||    
T  53303 gcacggacacttcttggattaaacgtgtcccggtgtcggacacgtg 53258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 53233 - 53183
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggt 294  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||| |||||    
T  53233 cgacacttataattacactgaattatgtgattttctcaaattattggcggt 53183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 68249 - 68309
Alignment:
Q  245 gacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtc 305  Q
    |||||||||||| | ||| |||||||||||||| ||||||||||| |||||  ||||||||    
T  68249 gacacctataattatactaaattatatgattttctcaaattattaacggtgctaatgtgtc 68309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 241719 - 241672
Alignment:
Q  193 aagcacggacacttcttggacgagacgtgtcccggtgtcggacacgtg 240  Q
    |||||||||||||||| |||  || |||||||||||||||||||||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtg 241672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 241639 - 241550
Alignment:
Q  252 ataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtggcc-gtctccgtgcttcatag 340  Q
    ||||| ||||| |||||| |||||||  |||||||||||| |||||   ||||| ||||| |||||||| || || ||||||||||||||    
T  241639 ataattacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgcttcatag 241550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 26447 - 26373
Alignment:
Q  243 acgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtc 317  Q
    ||||||| |||||  ||| |||||||| ||||||| |||||||||||| |||||| | |||||  ||||||||||    
T  26447 acgacacatataacgacattgaattatgtgattttctcaaattattagtggtgtcgacgtgtcactgtctgtgtc 26373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 70331 - 70238
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtg-tcgtggccgtctccgtgcttc 336  Q
    |||||| |||||| |||||||||||| | ||||| ||||||||||| | ||||| |  |||| ||||||||| | ||| |||| ||||||||||    
T  70331 cgacacttataattacactgaattatgttattttttcaaattattaactgtgtcgacatgtctgtgtctgtgtttgtgtccgtatccgtgcttc 70238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 20216 - 20172
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  20216 taattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 51855 - 51811
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||||    
T  51855 taattacactgaattatgtgattttttcaaattattagctgtgtc 51811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 8851 - 8775
Alignment:
Q  244 cgacacctataatcacactgaattatatgattttatcaaattattagcggtgtcaatgtgtcggtgtctgtgtcgtg 320  Q
    |||||| | |||| ||||| ||| |||||||||| ||||||||||||| |||||   ||||| ||||| ||||||||    
T  8851 cgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtg 8775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 92851 - 92807
Alignment:
Q  253 taatcacactgaattatatgattttatcaaattattagcggtgtc 297  Q
    |||| |||||||||||| | ||||| |||||||||||||||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggtgtc 92807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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