View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_5 (Length: 400)
Name: NF17999_low_5
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 10497726 - 10498109
Alignment:
| Q |
1 |
atgaccaccaaatttgaaagtcaaagtttaggcatggctgcttataaaaagcagaaaacaagtctaatatctaataagctttgggatgggtacctcaagt |
100 |
Q |
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| T |
10497726 |
atgaccaccaaatttgaaagtcaaagtttagccatggctgctaataaaaagcagaaaacaagtctaatatctaataagctttgggatgggtacctcaagt |
10497825 |
T |
|
| Q |
101 |
tgaactctgctctaaccgttaccacggttgcattctttcataggtaattaaatcatattcttttaaagttaatttgctagtgtaacttttacatttttaa |
200 |
Q |
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| T |
10497826 |
tgaactctgctctaaccgttaccacggttgcattctttcataggtaattaaatcatcttcttttaaagttaatttgctagtgtaacttttacatttttaa |
10497925 |
T |
|
| Q |
201 |
atttaataaagttgaagctatgtaggatattacaatttcatgctactaagttgattgatatatgatgcaaacaaagttcattttctttcttcatacaatt |
300 |
Q |
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| T |
10497926 |
atttaataaagttgaagctatgtaggatattacaa-ttcatgctactaagttgattgatgtatgatgcaaactaagttcattttctgtcttcatacaatt |
10498024 |
T |
|
| Q |
301 |
agattagtttatgaaaagaattggaagacaaaaattatggagtgtcgtttatatcttttgtccaacctttgttgagtgaaaattg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10498025 |
agattagtttatgaaaagaattggaagacaaaaattatggagtgtcgtttatatcttttgtccaacctttcttgagtgaaaattg |
10498109 |
T |
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