View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_6 (Length: 359)
Name: NF17999_low_6
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 32142791 - 32142455
Alignment:
| Q |
1 |
catgctttagtttccaagtcatcaaattaatttttcctttgtgaggttgagccaaatcacttccccttcgaaagttttattttattgtttttatatataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
32142791 |
catgctttagtttccaagtcatcaaattaatttttcctttgtgaggttgagccaaatcacttcccctttgaaagttgtaatttattgtttttatatataa |
32142692 |
T |
|
| Q |
101 |
atgatgaagcatcctcacgactgcaattgcacattaaatttgagcatgctcatatgtatgtatgacataaggatataagatcaagaatttatgaaatact |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32142691 |
atgatgaagcatcctcacgactgcaattgcgcattaaatttgagcatgctcatatgtatgtatgacataaggacataagatcaagaatttatgaaatact |
32142592 |
T |
|
| Q |
201 |
cctaaannnnnnnnnnnnnnnnnnnnatgaaatcaaataaataaataggaaggttattcatctcctacataaggtagcatatcattctcttgcttgtcct |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32142591 |
cctaaa-----agattttttttttttatgaaatcaaataaataaataggaaggttattcatctcctacataaggtagcatatcattctcttgcttgtcct |
32142497 |
T |
|
| Q |
301 |
taacggcctcctataatatacttaaatggtttcgttcgacgt |
342 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32142496 |
taacggcctcctagaatatacttaaatggtttcgttcgacgt |
32142455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32150867 - 32150767
Alignment:
| Q |
1 |
catgctttagtttccaagtcatcaaattaatttttcctttgtgaggttgagccaaatcacttccccttcgaaagttttattttattgtttttatatataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32150867 |
catgctttagtttccaagtcatcaaattaatttttcctttgtgaggttgagccaaatcgcttccccttcgaaagttgtattttattgtttttatatataa |
32150768 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
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| |
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|
| T |
32150767 |
a |
32150767 |
T |
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