View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_8 (Length: 349)
Name: NF17999_low_8
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 43974642 - 43974320
Alignment:
| Q |
1 |
attgggcccacttaaatagaacaagaacatgaatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttggactc |
100 |
Q |
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| T |
43974642 |
attgggcccacttaaatagaacaagaa----aatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttggactc |
43974547 |
T |
|
| Q |
101 |
acaaaaatgtaaccaagaacaaaaattacagtgctagtgttggagatgctctaatgaaatgtannnnnnnnnnnnnnnaagaaagtgatgaaatgtactt |
200 |
Q |
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| T |
43974546 |
acaaaaatgtaaccaagaac-aaaattacaatgctagtgttggagatgctctaatgaaatgtatttttttttttttttaagaaagtaatgaaatgtactt |
43974448 |
T |
|
| Q |
201 |
attatatttgatatcaccaaatatgagtattgagtagtgttttgcttatatattagagctcgggtggagtatataagaaattcaaagtaaactcttcttg |
300 |
Q |
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| T |
43974447 |
attatatttgatatcaccaaatatgagtattgagtagtgttttgcttatatattagagctcgggtggagtatataagaaactcaaagtaaac---tcttg |
43974351 |
T |
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| Q |
301 |
caattgcctcatgtacttcgctatgttctat |
331 |
Q |
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| T |
43974350 |
caattgcctcatgtacttcgctatgttctat |
43974320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 40118802 - 40118941
Alignment:
| Q |
8 |
ccacttaaatagaacaagaacatgaatgaaaattttccgttggagtgaaaaatggattgattttttgaaatcctacctctcacgtttggactcacaaaaa |
107 |
Q |
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| T |
40118802 |
ccacttaaatagaacaagaacatgaatgaaaattttccttttgaaag-aaaatggattga-ttttggaaatcctacttgtcacgtttggacccacaaaaa |
40118899 |
T |
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| Q |
108 |
tgtaaccaagaacaaaaattacagtgctagtgttggagatgct |
150 |
Q |
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| T |
40118900 |
tataagcaagaac-aaaatttcaatgcaagcgttggagatgct |
40118941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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