View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17999_low_9 (Length: 342)
Name: NF17999_low_9
Description: NF17999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17999_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 41223208 - 41222900
Alignment:
| Q |
10 |
aagaatatactcagagggagagatttgatccctttgtgatcctatccggttcgagtaattagtctctgcagtcgtgcgcagaggcaggatattgattcac |
109 |
Q |
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| T |
41223208 |
aagaaaatactcagagggagagatttgatcc-tttgtgatcctatccggttcgaggaattagtctctgcagtcgtgcgcaaaggctggatactgattcac |
41223110 |
T |
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| Q |
110 |
attaaaaaggagttcaattcaattcaatagaatttttcgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctc |
209 |
Q |
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| T |
41223109 |
attaaaaaggagttcaattcaat-----agaattttttgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctc |
41223015 |
T |
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| Q |
210 |
agaaatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41223014 |
agaaatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaact |
41222915 |
T |
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| Q |
310 |
tctcaacaaaattca |
324 |
Q |
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||||||||||||||| |
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| T |
41222914 |
tctcaacaaaattca |
41222900 |
T |
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