View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1799_high_1 (Length: 358)

Name: NF1799_high_1
Description: NF1799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1799_high_1
NF1799_high_1
[»] chr1 (15 HSPs)
chr1 (1-358)||(48585562-48585919)
chr1 (1-358)||(48640135-48640492)
chr1 (27-231)||(48661896-48662100)
chr1 (34-230)||(48617776-48617972)
chr1 (34-231)||(11547593-11547790)
chr1 (30-149)||(48629282-48629401)
chr1 (27-149)||(48667567-48667689)
chr1 (304-358)||(48618046-48618100)
chr1 (75-230)||(48653483-48653638)
chr1 (304-358)||(48661787-48661841)
chr1 (304-358)||(48653355-48653409)
chr1 (9-163)||(48656998-48657152)
chr1 (302-355)||(48667385-48667438)
chr1 (304-358)||(48629101-48629155)
chr1 (306-358)||(11547466-11547518)
[»] chr3 (1 HSPs)
chr3 (27-230)||(19665125-19665328)
[»] chr8 (3 HSPs)
chr8 (10-163)||(25892459-25892613)
chr8 (25-235)||(27224328-27224538)
chr8 (25-235)||(27228531-27228741)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 48585919 - 48585562
Alignment:
Q  1 tgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48585919 tgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaaggg 48585820  T
Q  101 tgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585819 tgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtact 48585720  T
Q  201 ttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccct 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585719 ttcgctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccct 48585620  T
Q  301 ctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48585619 ctatttctcaaatgatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 48585562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 48640492 - 48640135
Alignment:
Q  1 tgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48640492 tgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaaggg 48640393  T
Q  101 tgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640392 tgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtact 48640293  T
Q  201 ttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccct 300  Q
    ||| |||||||||||||||| |||||||||||||| ||   | |||| ||||||||||||||||||||||  |||||||||||||||||||| |||| ||    
T  48640292 ttcgctttcgagttctttgacgatggtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacact 48640193  T
Q  301 ctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
     |||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||    
T  48640192 ttatttcacaaatgataaagaatcatgccgattcaaacaaaccattttcatgtatcat 48640135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 48662100 - 48661896
Alignment:
Q  27 ctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 126  Q
    |||||||| ||||||||||||||||||||||||| || |||| || |||||||||||| |||||||||||| |||||| |||| || |||||||||||||    
T  48662100 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacag 48662001  T
Q  127 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg 226  Q
    |||  ||||||||| ||||| ||  || | || ||||||   |||||||||||||||| || ||||||||| || ||  |||||||||||||||| || |    
T  48662000 agaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatag 48661901  T
Q  227 tttac 231  Q
    |||||    
T  48661900 tttac 48661896  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 48617776 - 48617972
Alignment:
Q  34 tctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 133  Q
    |||||| |||||||||||||||||||| || |||| || |||||| ||||| ||||||||||||||||||  |||| ||||||| |||||||||||  ||    
T  48617776 tctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagc 48617875  T
Q  134 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta 230  Q
    ||||||| ||||  || ||| |||||| |||||||| |||| |   ||| |||||||||||||| || |  |||| |||||||| ||||||||||||    
T  48617876 tggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatgatggttta 48617972  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 11547790 - 11547593
Alignment:
Q  34 tctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 133  Q
    |||||||||||| |||||||||||||| || |||| || || ||| ||||| ||||||||||||||||||  |||| ||||||| ||||||| |||  ||    
T  11547790 tctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagc 11547691  T
Q  134 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac 231  Q
    ||||||| |||| | | | | |||||||||| |||| |||| ||  ||  |||| ||| ||||| || || |||| ||||||||||||||||||||||    
T  11547690 tggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatggtttac 11547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 48629401 - 48629282
Alignment:
Q  30 cttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 129  Q
    ||||| ||||||||||||||||||||||||| || |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 48629302  T
Q  130 cggctggcaaaaacatgcga 149  Q
      || |||||| ||||||||    
T  48629301 aagcaggcaaagacatgcga 48629282  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 48667689 - 48667567
Alignment:
Q  27 ctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 126  Q
    |||||||| ||||||||||||||||||||||||| || |||| || ||||||| || | ||||||||||||||||||  |||| ||||||| ||||||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag 48667590  T
Q  127 agacggctggcaaaaacatgcga 149  Q
    | |  | ||||||||| ||||||    
T  48667589 aaaaaggtggcaaaaatatgcga 48667567  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 48618046 - 48618100
Alignment:
Q  304 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  48618046 tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcat 48618100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 48653638 - 48653483
Alignment:
Q  75 ctaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaat 174  Q
    |||| ||||| | ||||||||||||||||  |||| || |||| ||||||||| |  ||||| ||| ||||  || ||| ||||||||||||||| ||||    
T  48653638 ctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaat 48653539  T
Q  175 tagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta 230  Q
     |   |||||||||||||||||| |  || |||| ||||||||||||||| |||||    
T  48653538 cattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta 48653483  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 48661841 - 48661787
Alignment:
Q  304 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||    
T  48661841 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcat 48661787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 48653409 - 48653355
Alignment:
Q  304 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    |||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||    
T  48653409 tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcat 48653355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 48657152 - 48656998
Alignment:
Q  9 gaagatcccattaagcttctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactg 108  Q
    |||| ||||||| || |||||||||| |||| |||  || | ||||| |||| |  |||| ||  |||||| |||| |||||||||||||||| |  |||    
T  48657152 gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg 48657053  T
Q  109 ttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 163  Q
    | ||||||||||||||  |||  ||||||||| |||||  | |||||||||||||    
T  48657052 tcatcttcaccacaacgcagaaagctggcaaagacatggaaactgctaacaacat 48656998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 48667438 - 48667385
Alignment:
Q  302 tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtat 355  Q
    |||||||||||| || ||||||||||||||||  ||||||||| ||||||||||    
T  48667438 tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtat 48667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 48629155 - 48629101
Alignment:
Q  304 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    ||||| |||| ||||||||||||||||||| ||  |||||| |||||||||||||    
T  48629155 tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcat 48629101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 11547518 - 11547466
Alignment:
Q  306 tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcat 358  Q
    |||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||    
T  11547518 tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcat 11547466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 19665125 - 19665328
Alignment:
Q  27 ctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 126  Q
    |||||| |||| | |||||||||||||||||||| || |||| || |||||| ||||| |||||||||||||||| |  | || ||||||| ||| ||||    
T  19665125 ctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacag 19665224  T
Q  127 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg 226  Q
    |||  ||||||||| |||||| | ||| ||||||||||| | |||||| |   |||||||| ||||||||| || ||  |||| | ||||||||||||||    
T  19665225 agaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatgg 19665324  T
Q  227 ttta 230  Q
    ||||    
T  19665325 ttta 19665328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 25892459 - 25892613
Alignment:
Q  10 aagatcccattaagcttctccttgtctcttttccagcacaaggacacataagccatcttgttggacta-ggaaagtatcttgctgcaaagggtgccactg 108  Q
    |||||||||||||||| ||||||||||||||||||   ||| ||||| ||| ||||||| |||| ||| ||||| | ||||||||||| ||||||  ||     
T  25892459 aagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgcaaggggtgcatcta 25892558  T
Q  109 ttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 163  Q
    | ||||||||||||||||| || || |||| ||||||||||  ||||||||||||    
T  25892559 tcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat 25892613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 27224538 - 27224328
Alignment:
Q  25 ttctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 124  Q
    |||||||||| || | ||||||||||||||||||||  | | |  || |||||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27224538 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27224439  T
Q  125 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat 224  Q
    |||||  ||||||||| |  || || ||| |||||| |||| ||| |||||||  | |||| ||||| ||||| || || | ||  |||||||||||||     
T  27224438 agagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatgac 27224339  T
Q  225 ggtttaccaga 235  Q
    |||||| ||||    
T  27224338 ggtttatcaga 27224328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 27228741 - 27228531
Alignment:
Q  25 ttctccttgtctcttttccagcacaaggacacataagccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 124  Q
    |||||||||| || | ||||||||||||||||||||  | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27228741 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27228642  T
Q  125 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat 224  Q
     ||||  ||||||| | |  || || ||| ||||||||||||||| |||| ||  | |||| ||||| ||||| || || | |||||||||||||| ||     
T  27228641 tgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagac 27228542  T
Q  225 ggtttaccaga 235  Q
    |||||| ||||    
T  27228541 ggtttatcaga 27228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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