View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1799_low_5 (Length: 213)

Name: NF1799_low_5
Description: NF1799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1799_low_5
NF1799_low_5
[»] chr2 (2 HSPs)
chr2 (23-213)||(9166226-9166428)
chr2 (81-213)||(9154867-9155011)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 9166226 - 9166428
Alignment:
Q  23 aggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatcttcatcttcctctc 122  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9166226 aggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatcttcatcttcctctc 9166325  T
Q  123 ctttatcagaggaagg------------atcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc 210  Q
    ||||||||||||||||            |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9166326 ctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc 9166425  T
Q  211 acc 213  Q
    |||    
T  9166426 acc 9166428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 9154867 - 9155011
Alignment:
Q  81 gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagg------------atcatcaccagnnnnnnnacggcttctccc 168  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||            |||||||||||       ||||| ||||||    
T  9154867 gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc 9154966  T
Q  169 accacctgcgttgctttctttgtcatctaacttccaatgttcacc 213  Q
    ||| ||||||||||| || |||||||||||||||| |||||||||    
T  9154967 accccctgcgttgctctccttgtcatctaacttcccatgttcacc 9155011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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