View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_high_14 (Length: 228)
Name: NF18000_high_14
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39617595 - 39617386
Alignment:
| Q |
18 |
tttagatacattgatcattgataaaaaattagttacatttagact--------gattacctaagcttactccatccaaaaacaagagattaagagcaata |
109 |
Q |
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| T |
39617595 |
tttagttacattgatcattaataaaaaattagttacatttagactcaactttagattatctaagcttactctatccaaaaacaagagattaagagcaata |
39617496 |
T |
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| Q |
110 |
aaaataataaccaccacaattttcagtnnnnnnnnn----tcataattagaagtgttcaaattcaaactgatccaaaataaaatcagtaaaccgataaaa |
205 |
Q |
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| T |
39617495 |
aaaataataaccaccacaattttaagtaaaaaaaaaaaaatcataattagaagtgttcaaattcaaactgatccaaaataaaatcagtaaaccgataaaa |
39617396 |
T |
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| Q |
206 |
attgaatatt |
215 |
Q |
| |
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|||||||||| |
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| T |
39617395 |
attgaatatt |
39617386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 10997181 - 10997226
Alignment:
| Q |
160 |
gttcaaattcaaactgatccaaaataaaatcagtaaaccgataaaaa |
206 |
Q |
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| T |
10997181 |
gttcaaattcaaactgatccaaaataaaa-ctgtaaaccgatcaaaa |
10997226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 188
Target Start/End: Original strand, 28694615 - 28694646
Alignment:
| Q |
157 |
agtgttcaaattcaaactgatccaaaataaaa |
188 |
Q |
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| T |
28694615 |
agtgttcaaattcaaactgatccaaaataaaa |
28694646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 33747824 - 33747857
Alignment:
| Q |
158 |
gtgttcaaattcaaactgatccaaaataaaatca |
191 |
Q |
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| T |
33747824 |
gtgttcaaattcaaaccgatccaaaataaaatca |
33747857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 35672268 - 35672236
Alignment:
| Q |
158 |
gtgttcaaattcaaactgatccaaaataaaatc |
190 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
35672268 |
gtgttcaaattcaaaccgatccaaaataaaatc |
35672236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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