View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18000_high_2 (Length: 454)
Name: NF18000_high_2
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 39783194 - 39783614
Alignment:
| Q |
17 |
atggttattgtgcatgtagtcttttatcccacgagttaaatttgcgagacacaaaaaatatatctacgggcttaaatgtagatttggtctctctatttta |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783194 |
atggttattgtgcacgtagtcttttatcccacgagttaaatctgcgagacacaaaaaatatatctacgggcttaaatgtagatttggtctctctatttta |
39783293 |
T |
|
| Q |
117 |
gttaaaacgagaattttattctcagatttcttaaatctatgtttttagcaccctatttcacaagtttcaatannnnnnnnctttccgcaatccagtttga |
216 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39783294 |
gttgaaacgagaa-tttattctcagatttcttaaatctatgtttttagcaccctatttcacaagtttcaatattttttttctttccgcaatccagtttga |
39783392 |
T |
|
| Q |
217 |
gannnnnnnaacgtgtcatgttttttaagtatgttgaattataattaatggtgtgacattgttgattttgacagaaaacattggatttctaaagaatatg |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783393 |
gatttttttaacgtgtcatgttttttaagtatgttgaattataattaatggtgtgacattgttgattttgacagaaaacattggatttctaaagaatatg |
39783492 |
T |
|
| Q |
317 |
attaca-nnnnnnnnnggtcgaaagcagaatttgatcaatgaaactgaacaaaatgttgtaatagagtttttggcccatgtttcttgtccacttcaccaa |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783493 |
attacattttttttttggtcgaaagcagaatttgatcaatgaaactgaacaaaatgttgtaatagagtttttggcccatgtttcttgtccacttcaccaa |
39783592 |
T |
|
| Q |
416 |
agtcacatcttcggacgtaatt |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39783593 |
agtcacatcttcggacgtaatt |
39783614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University