View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18000_high_4 (Length: 414)

Name: NF18000_high_4
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18000_high_4
NF18000_high_4
[»] chr6 (20 HSPs)
chr6 (19-214)||(14589512-14589707)
chr6 (19-212)||(14623170-14623363)
chr6 (241-398)||(14589734-14589891)
chr6 (56-182)||(33123017-33123143)
chr6 (241-346)||(14623392-14623498)
chr6 (44-184)||(7632776-7632916)
chr6 (61-196)||(7632781-7632916)
chr6 (60-183)||(26388201-26388324)
chr6 (79-198)||(29938608-29938726)
chr6 (44-169)||(3989531-3989656)
chr6 (64-182)||(3989524-3989642)
chr6 (61-179)||(14589554-14589672)
chr6 (45-179)||(26388202-26388336)
chr6 (61-179)||(33123022-33123140)
chr6 (136-195)||(10405046-10405105)
chr6 (61-179)||(14623212-14623330)
chr6 (61-171)||(29938627-29938736)
chr6 (139-183)||(30629598-30629642)
chr6 (56-101)||(30629597-30629642)
chr6 (44-100)||(32124214-32124270)
[»] chr4 (40 HSPs)
chr4 (42-183)||(22720498-22720639)
chr4 (45-198)||(22720498-22720651)
chr4 (44-183)||(52673592-52673731)
chr4 (42-183)||(22768136-22768277)
chr4 (43-196)||(52673592-52673745)
chr4 (45-183)||(22768151-22768289)
chr4 (63-181)||(41622106-41622224)
chr4 (45-183)||(44626157-44626293)
chr4 (81-195)||(41622128-41622242)
chr4 (44-109)||(2198042-2198107)
chr4 (45-112)||(22923654-22923721)
chr4 (45-112)||(22928307-22928374)
chr4 (45-112)||(22984586-22984653)
chr4 (45-112)||(22998174-22998241)
chr4 (136-196)||(2198042-2198102)
chr4 (281-328)||(51369221-51369268)
chr4 (42-115)||(5970275-5970348)
chr4 (136-196)||(15794757-15794818)
chr4 (136-184)||(39396827-39396875)
chr4 (61-113)||(39396832-39396884)
chr4 (136-195)||(2198122-2198180)
chr4 (136-183)||(22923666-22923713)
chr4 (136-183)||(22928319-22928366)
chr4 (136-183)||(22984598-22984645)
chr4 (136-183)||(22998186-22998233)
chr4 (55-114)||(49083047-49083105)
chr4 (86-128)||(15794800-15794842)
chr4 (146-188)||(50485791-50485833)
chr4 (45-114)||(52299073-52299141)
chr4 (136-184)||(6131436-6131484)
chr4 (140-196)||(22020110-22020166)
chr4 (42-94)||(22923712-22923764)
chr4 (42-94)||(22928365-22928417)
chr4 (42-94)||(22984644-22984696)
chr4 (42-94)||(22998232-22998284)
chr4 (54-114)||(34016165-34016224)
chr4 (139-183)||(35884359-35884403)
chr4 (45-101)||(35884418-35884474)
chr4 (139-183)||(35884418-35884462)
chr4 (140-196)||(39897103-39897159)
[»] chr5 (17 HSPs)
chr5 (48-182)||(26221022-26221156)
chr5 (60-183)||(21032539-21032662)
chr5 (54-183)||(42364224-42364353)
chr5 (42-183)||(42364227-42364368)
chr5 (61-184)||(29486504-29486627)
chr5 (52-184)||(29486500-29486632)
chr5 (45-184)||(5240221-5240359)
chr5 (56-179)||(21032538-21032661)
chr5 (81-183)||(5240233-5240335)
chr5 (54-196)||(7604182-7604325)
chr5 (71-179)||(26221035-26221143)
chr5 (140-195)||(36864512-36864567)
chr5 (45-176)||(12959939-12960072)
chr5 (62-181)||(892560-892679)
chr5 (154-195)||(25713694-25713735)
chr5 (51-116)||(27895898-27895963)
chr5 (61-109)||(892562-892610)
[»] chr8 (14 HSPs)
chr8 (45-183)||(6197821-6197959)
chr8 (44-179)||(6197837-6197972)
chr8 (44-169)||(13325116-13325237)
chr8 (91-183)||(27939032-27939124)
chr8 (54-179)||(43140550-43140676)
chr8 (54-183)||(43140553-43140683)
chr8 (45-163)||(11322589-11322706)
chr8 (43-110)||(28205791-28205858)
chr8 (77-195)||(11322589-11322706)
chr8 (136-181)||(1214022-1214067)
chr8 (71-114)||(13325116-13325159)
chr8 (93-180)||(28205808-28205895)
chr8 (70-116)||(158447-158493)
chr8 (136-169)||(158448-158481)
[»] chr7 (23 HSPs)
chr7 (44-198)||(4132380-4132535)
chr7 (42-179)||(4132397-4132535)
chr7 (44-109)||(26982758-26982823)
chr7 (136-183)||(26982771-26982818)
chr7 (48-198)||(38646164-38646315)
chr7 (56-198)||(41115556-41115698)
chr7 (45-114)||(21857064-21857133)
chr7 (136-196)||(45578005-45578065)
chr7 (42-109)||(34840606-34840673)
chr7 (136-183)||(43250425-43250472)
chr7 (136-205)||(24155643-24155712)
chr7 (136-181)||(38646175-38646220)
chr7 (56-109)||(43250420-43250473)
chr7 (44-112)||(24155635-24155703)
chr7 (42-102)||(38646255-38646315)
chr7 (53-116)||(11602841-11602904)
chr7 (54-112)||(21587839-21587897)
chr7 (141-183)||(43250376-43250418)
chr7 (79-115)||(7107709-7107745)
chr7 (54-114)||(21857162-21857222)
chr7 (79-115)||(29770401-29770437)
chr7 (139-179)||(40037646-40037686)
chr7 (55-99)||(43250374-43250418)
[»] chr3 (14 HSPs)
chr3 (41-161)||(35239682-35239802)
chr3 (52-159)||(50334923-50335030)
chr3 (79-181)||(29497369-29497471)
chr3 (45-153)||(32186884-32186992)
chr3 (79-183)||(35239682-35239786)
chr3 (136-179)||(50334932-50334975)
chr3 (61-161)||(29497371-29497471)
chr3 (87-183)||(32186896-32186992)
chr3 (44-108)||(36344518-36344582)
chr3 (136-196)||(36344522-36344582)
chr3 (44-109)||(1779488-1779553)
chr3 (290-331)||(11532681-11532722)
chr3 (79-115)||(379152-379188)
chr3 (140-184)||(39836955-39836999)
[»] chr1 (16 HSPs)
chr1 (44-193)||(8352129-8352278)
chr1 (56-196)||(8352129-8352269)
chr1 (45-175)||(26468289-26468419)
chr1 (61-148)||(14773765-14773852)
chr1 (136-183)||(26468301-26468348)
chr1 (64-183)||(31635752-31635871)
chr1 (51-154)||(43731155-43731258)
chr1 (71-169)||(31635766-31635864)
chr1 (106-183)||(30800186-30800263)
chr1 (44-110)||(5368854-5368920)
chr1 (136-184)||(1659231-1659280)
chr1 (146-183)||(3384319-3384356)
chr1 (57-110)||(30800289-30800342)
chr1 (140-193)||(32796836-32796889)
chr1 (138-184)||(39969771-39969819)
chr1 (40-116)||(38834601-38834677)
[»] chr2 (16 HSPs)
chr2 (43-151)||(8996792-8996900)
chr2 (45-102)||(43100744-43100801)
chr2 (81-184)||(8717540-8717643)
chr2 (89-183)||(8996792-8996886)
chr2 (54-112)||(10495722-10495780)
chr2 (61-116)||(8996734-8996789)
chr2 (136-183)||(10495730-10495777)
chr2 (91-166)||(39792136-39792211)
chr2 (136-183)||(43100756-43100803)
chr2 (45-94)||(13953862-13953911)
chr2 (146-183)||(13953862-13953899)
chr2 (45-94)||(14095069-14095118)
chr2 (146-183)||(14095069-14095106)
chr2 (136-184)||(8996729-8996777)
chr2 (44-116)||(20218620-20218692)
chr2 (282-342)||(20493307-20493367)
[»] scaffold0155 (1 HSPs)
scaffold0155 (45-94)||(33971-34020)
[»] scaffold0007 (1 HSPs)
scaffold0007 (79-115)||(77378-77414)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 14589512 - 14589707
Alignment:
Q  19 attccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589512 attccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtcttt 14589611  T
Q  119 agtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgtttccttttcaactg 214  Q
    | ||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  14589612 attatagaccggacagattgattattcaatgtatctaaaaagtaaagttttatttataatagtgatgagagggagtataggtttccctttcaactg 14589707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 14623170 - 14623363
Alignment:
Q  19 attccgacaattaagcatatttcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtcttt 118  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14623170 attccgacaattaaacatatttcatatacttcattcggtcattattataagcaaaacttcacttttcagatacattgaataattcatgtatctaatcttt 14623269  T
Q  119 agtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgtttccttttcaac 212  Q
    | ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14623270 attatagactgaacagattaatttttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgtttccctttcaac 14623363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 14589734 - 14589891
Alignment:
Q  241 atcttatcgcaataataatcatttgatgttgatgccattggttcattgacaagagtttgcctttgtaatttcatgtgacaaagttcaaatatattcttgt 340  Q
    ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14589734 atcttattgcaataataatcatgtgatgttgatgccagtgattcattgacaagagtttgcctttgtaatttcatgtgataaagttcaaatatattcttgt 14589833  T
Q  341 tacatgtctctttcccattgttattaaaagtccaagagataaatactaaattattcat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589834 tacatgtctctttcccattgttattaaaagtccaagagataaatactaaattattcat 14589891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 33123017 - 33123143
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 155  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||  |||||||| || |  ||||||||| | ||||||||    
T  33123017 gtcattattataaacaaaacttcactttttaaatacattgaataattaatgtatctagtcttttttatagacttgatacgttaattattaagtgtatcta 33123116  T
Q  156 aaaagtgaagttttatttataatagtg 182  Q
    |||||| || ||||  |||||||||||    
T  33123117 aaaagtaaacttttgcttataatagtg 33123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 14623392 - 14623498
Alignment:
Q  241 atcttatcgcaataataatc-atttgatgttgatgccattggttcattgacaagagtttgcctttgtaatttcatgtgacaaagttcaaatatattcttg 339  Q
    ||||||| |||||||||||| || |||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||     
T  14623392 atcttattgcaataataatccatgtgatgttgatgccagtagttcattgactaaagtttgcctttgtaatttcatgtgacaaagttcaaatagactcttt 14623491  T
Q  340 ttacatg 346  Q
    |||||||    
T  14623492 ttacatg 14623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 7632916 - 7632776
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||  |||| || || ||||| || |  || |||||    
T  7632916 atactccctccggtcattattataaacaaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattat 7632817  T
Q  144 tcaatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    | ||||||  || ||||||||||||| ||||||||||||||    
T  7632816 tgaatgtagttagaaagtgaagttttgtttataatagtgat 7632776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 7632781 - 7632916
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    |||||||||||||||||||||||  |  |||||| ||||||  |||||||||||||||| ||||||| ||| |  ||||||||||| |||||||||||||    
T  7632781 tattataaacaaaacttcactttctaactacattcaataatcaatgtatctagtctttattatagaccggatacattaattattcagtgtatctaaaaag 7632880  T
Q  161 tgaagttttatttataatagtgatgagagggagtat 196  Q
    | ||||||| ||||||||| |||   ||||||||||    
T  7632881 ttaagttttgtttataataatgaccggagggagtat 7632916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 26388201 - 26388324
Alignment:
Q  60 ttattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaa 159  Q
    |||||||||||||||||  |||||| ||||| ||||||||||| ||||||||| |||||| ||||||||| | |  ||||||||||||| ||| ||||||    
T  26388201 ttattataaacaaaactctactttttagatatattgaataattaatgtatctaatctttattatagactgaatacattaattattcaatatatataaaaa 26388300  T
Q  160 gtgaagttttatttataatagtga 183  Q
    ||| ||||||  ||||||||||||    
T  26388301 gtggagtttttcttataatagtga 26388324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 29938726 - 29938608
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 178  Q
    |||||| ||||||||||||||||| |||||||||||||||| | || ||| || |  ||||||||| ||||||||||||||||||| ||||| |||||||    
T  29938726 actttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt-aatgtatctaaaaagtgaaattttacttataat 29938628  T
Q  179 agtgatgagagggagtatat 198  Q
    |||||  ||| |||||||||    
T  29938627 agtgagcagatggagtatat 29938608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 3989656 - 3989531
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    |||||| || ||| || |||||||| |||||||| ||| || ||||||||||||||||| ||||||||||||| || || ||||| || |  || |||||    
T  3989656 atactcgctccggccactattataatcaaaacttaactattaagatacattgaataattgatgtatctagtctataataaagactagaaacattgattat 3989557  T
Q  144 tcaatgtatctaaaaagtgaagtttt 169  Q
    |  |||||| ||||||||||||||||    
T  3989556 tttatgtatttaaaaagtgaagtttt 3989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 3989524 - 3989642
Alignment:
Q  64 tataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtga 163  Q
    ||||| ||||||||||||||| | ||||||  ||||||  |||| ||||||||||| |||||||| || |  | ||||||||||||||||| || ||| |    
T  3989524 tataagcaaaacttcactttttaaatacataaaataatcaatgtttctagtctttattatagactagatacatcaattattcaatgtatcttaatagtta 3989623  T
Q  164 agttttatttataatagtg 182  Q
    ||||||  |||||||||||    
T  3989624 agttttgattataatagtg 3989642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 14589672 - 14589554
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    ||||||||| ||||||| |||||| ||||||||||||||||  || | ||  |||| || || ||||| || |  | ||||||||||||||||| |||||    
T  14589672 tattataaataaaactttactttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatctgaaaag 14589573  T
Q  161 tgaagttttatttataata 179  Q
    ||||||||| |||||||||    
T  14589572 tgaagttttgtttataata 14589554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 26388336 - 26388202
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| |||||| ||||||||  |||||| ||||||| | ||| ||||||||||| ||||||  ||||| || || ||| | || |  |||||||||    
T  26388336 tactccctccggtcactattataagaaaaactccactttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattatt 26388237  T
Q  145 caatgtatctaaaaagtgaagttttatttataata 179  Q
    |||| ||||||||||||  |||||| |||||||||    
T  26388236 caatatatctaaaaagtagagttttgtttataata 26388202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 33123140 - 33123022
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    |||||||| ||||| || |||||| ||||||| | ||||||| | ||||| ||||| ||  | ||||| || |  ||||||||||||||||| |||||||    
T  33123140 tattataagcaaaagtttactttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaaaag 33123041  T
Q  161 tgaagttttatttataata 179  Q
    ||||||||| |||||||||    
T  33123040 tgaagttttgtttataata 33123022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 10405105 - 10405046
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 195  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||| |||| |||||    
T  10405105 ttaattatttaatgtatttaaaaaatgaagttttatttataatagtgatcagagagagta 10405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 14623330 - 14623212
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    ||||||||| |||||||||||||| |||||||||||| |||| || | |  ||||| || || ||| | || |  | ||||||||||||||||| |||||    
T  14623330 tattataaataaaacttcactttttagatacattgaaaaattaatctgttcagtctataataaagattagatacatgaattattcaatgtatctgaaaag 14623231  T
Q  161 tgaagttttatttataata 179  Q
    |||||||||  ||||||||    
T  14623230 tgaagttttgcttataata 14623212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 29938627 - 29938736
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    ||||||||  |||| ||||||||| ||||||||| ||||||| ||||||||||| |  | || ||||| || |  |||||||||||||||||||||||||    
T  29938627 tattataagtaaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatctaaaaag 29938725  T
Q  161 tgaagttttat 171  Q
    |  ||||||||    
T  29938726 tagagttttat 29938736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 30629642 - 30629598
Alignment:
Q  139 attattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||    
T  30629642 attattcaatctatctaaaaagtgaaattttgtttataatagtga 30629598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 30629597 - 30629642
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataat 101  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||    
T  30629597 gtcactattataaacaaaatttcactttttagatagattgaataat 30629642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 32124270 - 32124214
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataa 100  Q
    |||||| |||||||||||||||||| ||||| || |||||| |||| |||| |||||    
T  32124270 atactctcttcggtcattattataagcaaaaattgactttttagattcattcaataa 32124214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 22720498 - 22720639
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 141  Q
    ||||| ||||| | |||| |||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| | |  ||||||    
T  22720498 atatagtccctcccgtcactattataaacaaaattccactttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaatt 22720597  T
Q  142 attcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||| ||||||  ||||||||||||    
T  22720598 attcaatgtatctaaaaagtggagttttgcttataatagtga 22720639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 22720651 - 22720498
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||  ||||| || || ||||| || |  |||||||||    
T  22720651 tactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattatt 22720552  T
Q  145 caatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 198  Q
    |||||||||||||||||| | |||| ||||||||||||| | |||||| |||||    
T  22720551 caatgtatctaaaaagtggaattttgtttataatagtgacgggagggactatat 22720498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 52673592 - 52673731
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    ||||||||| | |||| |||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||| |||| |||||  |||| |  ||||||||    
T  52673592 atactccctcccgtcactattataagcaaaactttactttttagatatattgaataattaatgtatctagtttttattatagtatggatacattaattat 52673691  T
Q  144 tcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  52673692 tcaatgtatctaaaaagtgaaattttgcttataatagtga 52673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 22768136 - 22768277
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 141  Q
    |||| |||||| |||||| |||||||| ||||||| ||  ||| ||||||||||||||||| |||||||||||||||| ||||||||| |    ||||||    
T  22768136 atatgctccctccggtcactattataagcaaaactccatattttagatacattgaataattaatgtatctagtctttattatagactgcattcattaatt 22768235  T
Q  142 attcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||| ||| || |||||| ||||||    
T  22768236 attcaatgtatctaaaaagtgtagtgttgtttatagtagtga 22768277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 52673745 - 52673592
Alignment:
Q  43 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 142  Q
    |||||||  |||||||| |||||||| ||||| ||||||||| ||||||||||||||||| ||||||| |  || || || | ||| || |  |||||||    
T  52673745 tatactcatttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaatta 52673646  T
Q  143 ttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    |||||| |||||||||||| |||||||  |||||||||||| | ||||||||||    
T  52673645 ttcaatatatctaaaaagtaaagttttgcttataatagtgacgggagggagtat 52673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 22768289 - 22768151
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| |||||| || ||||||||| ||| ||||||| ||||||||||||||||| ||| ||  ||||| || || ||||| || |  |||||||||    
T  22768289 tactccctccggtcactactataaacaacactacactttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattatt 22768190  T
Q  145 caatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||  || ||||||  ||||||||||||    
T  22768189 caatgtatctaaaatatggagttttgcttataatagtga 22768151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 41622224 - 41622106
Alignment:
Q  63 ttataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtg 162  Q
    ||||||| |||| ||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||    |   ||||||||||||||||||||||| |     
T  41622224 ttataaataaaagttcactttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatctaaaaaata 41622125  T
Q  163 aagttttatttataatagt 181  Q
     | ||||| ||||||||||    
T  41622124 gatttttacttataatagt 41622106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 44626157 - 44626293
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| |||||| |||||||| ||||| || | |||||||||||||||||||| | ||||||||||||| || ||||  |   | |  |||||||||    
T  44626157 tactccctccggtcactattataatcaaaattttatttttcagatacattgaataactaatgtatctagtctatattataacc--aaaaaattaattatt 44626254  T
Q  145 caatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    || | ||| | ||||||||||||||| ||||||||||||    
T  44626255 cagtatatttgaaaagtgaagttttacttataatagtga 44626293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 41622128 - 41622242
Alignment:
Q  81 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 180  Q
    |||| |||||||||||||||||  ||||  |||||| || || ||||| || |  ||||| ||||||||||||||||||||||| ||||||||||||  |    
T  41622128 tttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatctaaaaagtgaacttttatttataactg 41622227  T
Q  181 tgatgagagggagta 195  Q
    ||||  |||||||||    
T  41622228 tgatcggagggagta 41622242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 2198042 - 2198107
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    ||||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  2198042 atactccctccggtcactattataagcaaaactccactttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 22923654 - 22923721
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22923654 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22923721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 22928307 - 22928374
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22928307 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22928374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 22984586 - 22984653
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22984586 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22984653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 22998174 - 22998241
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||||| |||||| |||||||| ||||||| || |||| ||||||||||||||||| |||||||||    
T  22998174 tactccctccggtcactattataagcaaaactccaatttttagatacattgaataattaatgtatcta 22998241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 2198102 - 2198042
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||   ||||||||||    
T  2198102 ttaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggagggagtat 2198042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 51369268 - 51369221
Alignment:
Q  281 gttcattgacaagagtttgcctttgtaatttcatgtgacaaagttcaa 328  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  51369268 gttcattggcaagagtttgactttgtaatttcatgggacaaagttcaa 51369221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 5970275 - 5970348
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtc 115  Q
    ||||||||||||||||| |  |||||||  ||| || |||||| ||||||||||||||||  ||||||||||||    
T  5970275 atatactcccttcggtcctatttataaaagaaagttgactttttagatacattgaataatgtatgtatctagtc 5970348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15794818 - 15794757
Alignment:
Q  136 ttaattattcaatgtatctaaaa-agtgaagttttatttataatagtgatgagagggagtat 196  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||||  ||||||||||    
T  15794818 ttaattattcaatgtatctaaaacaatgaaattttacttataatagtgattggagggagtat 15794757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 39396875 - 39396827
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    |||||||| | |||||| |||||||||||||||| ||||||||||||||    
T  39396875 ttaattatcccatgtatttaaaaagtgaagttttgtttataatagtgat 39396827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 39396832 - 39396884
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctag 113  Q
    |||||||||||||||||||||||| | |||||| | |||||| ||||||||||    
T  39396832 tattataaacaaaacttcactttttaaatacatgggataattaatgtatctag 39396884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 2198122 - 2198180
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 195  Q
    ||||||||||||||||| ||||||||||||||||  || ||||||||||  |||||||||    
T  2198122 ttaattattcaatgtatttaaaaagtgaagttttgctt-taatagtgatcggagggagta 2198180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22923713 - 22923666
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22923713 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22923666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22928366 - 22928319
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22928366 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22928319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22984645 - 22984598
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22984645 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22984598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22998233 - 22998186
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||    
T  22998233 ttaattattcaatgtatctaaaaattggagttttgcttataatagtga 22998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 49083047 - 49083105
Alignment:
Q  55 ggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    ||||| |||||||| |||||||||| |||| |||| |||||||||||| |||||||||||    
T  49083047 ggtcactattataagcaaaacttcattttt-agatgcattgaataattaatgtatctagt 49083105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 15794800 - 15794842
Alignment:
Q  86 agatacattgaataattcatgtatctagtctttagtatagact 128  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  15794800 agatacattgaataattaatgtatctggtctttattatagact 15794842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 50485791 - 50485833
Alignment:
Q  146 aatgtatctaaaaagtgaagttttatttataatagtgatgaga 188  Q
    ||||||||||||||||||| |||  ||||||||||||||||||    
T  50485791 aatgtatctaaaaagtgaaatttagtttataatagtgatgaga 50485833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 52299073 - 52299141
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    ||||| |||| ||||||||||||| ||||| || |||||| | ||||||||||||||| |||||| ||||    
T  52299073 tactctcttccgtcattattataagcaaaattttacttttta-atacattgaataattaatgtatttagt 52299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 6131484 - 6131436
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||||||    
T  6131484 ttaattatttaatgtatttaaaaagtaaagttttgattataatagtgat 6131436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 22020166 - 22020110
Alignment:
Q  140 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    ||||| |||| |||||||||||||| ||||  ||||||||||||  |||||||||||    
T  22020166 ttattgaatgaatctaaaaagtgaacttttgcttataatagtgaccagagggagtat 22020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 22923764 - 22923712
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22923764 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22923712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 22928417 - 22928365
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22928417 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22928365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 22984696 - 22984644
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22984696 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22984644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 22998284 - 22998232
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    ||||||||||| |||||| |||||||||||||| | || |||| |||||||||    
T  22998284 atatactccctccggtcactattataaacaaaattccattttttagatacatt 22998232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 34016165 - 34016224
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    |||||| ||||||| |||||  ||  |||||||||||||||||| ||||||||||||||||    
T  34016165 cggtcactattatagacaaatattatcttttcagatacattgaa-aattcatgtatctagt 34016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 35884403 - 35884359
Alignment:
Q  139 attattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||||| ||  ||| |||||||||||||    
T  35884403 attattcaatgtatctaaaaagtcaaagtttgtttataatagtga 35884359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 35884474 - 35884418
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataat 101  Q
    |||||| | |||||| |||||||||||||  || |||||| ||||||||||||||||    
T  35884474 tactccttccggtcactattataaacaaactttgactttttagatacattgaataat 35884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 35884418 - 35884462
Alignment:
Q  139 attattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||||| ||  ||| |||||||||||||    
T  35884418 attattcaatgtatctaaaaagtcaaagtttgtttataatagtga 35884462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 39897159 - 39897103
Alignment:
Q  140 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    |||||||||| |||||||||||||  ||||| || ||||||||| ||||||| ||||    
T  39897159 ttattcaatgaatctaaaaagtgattttttacttctaatagtgacgagagggtgtat 39897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 26221022 - 26221156
Alignment:
Q  48 tcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaa 147  Q
    ||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||| ||||||  | | |  |||||||||||     
T  26221022 tccctccggtcaatattataaacaaaactttactttttagatacattgaataattaatgtatctagtttttattatagatggtatatattaattattcag 26221121  T
Q  148 tgtatctaaaaagtgaagttttatttataatagtg 182  Q
    ||||||||||||||||||||||| ||||| |||||    
T  26221122 tgtatctaaaaagtgaagttttacttatattagtg 26221156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 21032662 - 21032539
Alignment:
Q  60 ttattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaa 159  Q
    ||||||||||||||| |  |||||| ||||| ||||||||||| |||||||||||||||| ||||||||| | |  ||||||||||||||||| ||||||    
T  21032662 ttattataaacaaaattctactttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtatataaaaa 21032563  T
Q  160 gtgaagttttatttataatagtga 183  Q
    ||| ||||||  ||||||||||||    
T  21032562 gtggagttttgcttataatagtga 21032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 42364224 - 42364353
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatc 153  Q
    |||||| | |||||||||||| || |||||| | ||||||||||||||| |||||| ||||||||| |||| ||| || |   |||||||||||||||||    
T  42364224 cggtcactgttataaacaaaaatttactttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatc 42364323  T
Q  154 taaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||  ||||||||||||    
T  42364324 taaaaagtgaagttttgcttataatagtga 42364353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 42364368 - 42364227
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 141  Q
    ||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||||||||   ||||||||| | || || |||||  | |  ||||||    
T  42364368 atatactccttccggtcactattataagcaaaacttcactttttagatacattgaataattagggtatctagtttataataaagactacatacattaatt 42364269  T
Q  142 attcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||| |||||||| || |||| ||||||| |||||    
T  42364268 attcaatgtatttaaaaagtaaatttttgtttataacagtga 42364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 29486627 - 29486504
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    |||||||| |||||  | |||||| ||||||||||||||||| || ||| |||||||||  ||| ||| || |  ||||||||||||||||||||||| |    
T  29486627 tattataagcaaaatctgactttttagatacattgaataattaatatatttagtctttatcataaactagatacattaattattcaatgtatctaaaatg 29486528  T
Q  161 tgaagttttatttataatagtgat 184  Q
    |||| ||||  |||||||||||||    
T  29486527 tgaaattttgcttataatagtgat 29486504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 29486500 - 29486632
Alignment:
Q  52 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgta 151  Q
    |||| ||| |||||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||| | |  || |||||  | |  ||||||||||||||||    
T  29486500 ttcgatcactattataagcaaaatttcacattttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgta 29486599  T
Q  152 tctaaaaagtgaagttttatttataatagtgat 184  Q
    |||||||||| |  ||||  |||||||||||||    
T  29486600 tctaaaaagtcagattttgcttataatagtgat 29486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 5240221 - 5240359
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| |||||| |||||||| ||||| || | |||| ||||||||||||||||| ||||||||||| | || || ||  | || |  |||||||||    
T  5240221 tactccctccggtcactattataagcaaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattatt 5240320  T
Q  145 caatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    |||||||||||||||  |||  ||| ||||||||||||||    
T  5240321 caatgtatctaaaaaaagaa-atttgtttataatagtgat 5240359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 21032538 - 21032661
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 155  Q
    |||| |||||||| ||||||| ||||||| | ||||||||||||||| ||||||  ||||| || || ||||| || |  ||||||||||||| ||||||    
T  21032538 gtcactattataagcaaaactccactttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatcta 21032637  T
Q  156 aaaagtgaagttttatttataata 179  Q
    ||||||  | |||| |||||||||    
T  21032638 aaaagtagaattttgtttataata 21032661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 5240335 - 5240233
Alignment:
Q  81 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 180  Q
    |||| ||||||||||||||||| |||||||||  ||||| |||| ||| || |  |||||||||||||||||||||||| | || ||||  |||||||||    
T  5240335 tttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatctaaaaaatcaaattttgcttataatag 5240236  T
Q  181 tga 183  Q
    |||    
T  5240235 tga 5240233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 7604325 - 7604182
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataa-ttcatgtatctagtctttagtatagactggacagtttaattattcaatgtat 152  Q
    |||||||||||||||  |||| || |||||| ||||| | ||||||| || ||| || ||||||||| |||||||| ||    ||| ||||||| | |||    
T  7604325 cggtcattattataagtaaaatttgactttttagatatactgaataaattaatggatttagtctttattatagacttgatgcattacttattcagtatat 7604226  T
Q  153 ctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    |||||||||||| ||||  |||||||||||||  ||||||||||    
T  7604225 ctaaaaagtgaaattttgcttataatagtgatcggagggagtat 7604182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 26221143 - 26221035
Alignment:
Q  71 aaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagtttta 170  Q
    |||||||||||||| ||||||| ||||||||| || |||    ||| || || | ||| || |  |||||||||||||||||||||||||| |||||||     
T  26221143 aaaacttcactttttagatacactgaataattaatatataccatctataataaaaactagatacattaattattcaatgtatctaaaaagtaaagttttg 26221044  T
Q  171 tttataata 179  Q
    |||||||||    
T  26221043 tttataata 26221035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 36864512 - 36864567
Alignment:
Q  140 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 195  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||  |||||||||    
T  36864512 ttattgaatgaatctaaaaagtgaacttttatttataatagtgatcggagggagta 36864567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 12959939 - 12960072
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaat--aattcatgtatctagtctttagtatagactggacagtttaatta 142  Q
    |||||| |||||| | |||| ||||||||||||||| ||| | ||| |||||||  |||| |||||||||||||||| |||||| | || |   ||| ||    
T  12959939 tactccattcggttactattgtaaacaaaacttcacattttaaatatattgaataaaattaatgtatctagtctttattatagaatagatacagtaacta 12960038  T
Q  143 ttcaatgtatctaaaaagtgaagttttatttata 176  Q
    |||  ||||||||| ||||| |||||| ||||||    
T  12960039 ttcgttgtatctaagaagtggagttttgtttata 12960072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 892679 - 892560
Alignment:
Q  62 attataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagt 161  Q
    ||||||| ||||| || |||||| | || ||||||||||   ||||||||||| | |||||||||    | |  |||||||||||||| |||||||||||    
T  892679 attataagcaaaaatttacttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatctaaaaagt 892580  T
Q  162 gaagttttatttataatagt 181  Q
    ||| ||||  ||||||||||    
T  892579 gaatttttgcttataatagt 892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 25713735 - 25713694
Alignment:
Q  154 taaaaagtgaagttttatttataatagtgatgagagggagta 195  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  25713735 taaaaattgaacttttatttataatagtgataagagggagta 25713694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 27895898 - 27895963
Alignment:
Q  51 cttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    ||||||||| |||||||||||||| |||| |||| |||| |||| ||||| | |||||| ||||||    
T  27895898 cttcggtcactattataaacaaaagttcattttttagattcatttaataaatgatgtatgtagtct 27895963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 892562 - 892610
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    |||||||| ||||| ||||||||| |||| |||||||||||| ||||||    
T  892562 tattataagcaaaaattcactttttagattcattgaataattaatgtat 892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 6197821 - 6197959
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| ||||||||||||||| ||||||| ||||||| ||||||||| |||| || ||||||||||||||||  ||||| |  | |  |||||||||    
T  6197821 tactccctccggtcattattataagcaaaactccactttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatt 6197920  T
Q  145 caatgtatctaaaaagtgaagttttatttataatagtga 183  Q
     |||||||||||||||| |||||||  ||||||||||||    
T  6197921 taatgtatctaaaaagtaaagttttgcttataatagtga 6197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 6197972 - 6197837
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    ||||||| | |||||| |||||||| |||||||| |||||| ||||||||| ||||||| |||||| || ||| |  || ||||| || |  |||| |||    
T  6197972 atactccatccggtcactattataagcaaaactttactttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactat 6197873  T
Q  144 tcaatgtatctaaaaagtgaagttttatttataata 179  Q
    | ||||||||||||||||| ||||||  ||||||||    
T  6197872 ttaatgtatctaaaaagtggagttttgcttataata 6197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 13325237 - 13325116
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    ||||||||| | |||||||||||||  |||||||||||||| || || ||||||||||  |||||| |||    || |||| ||| || |  ||||||||    
T  13325237 atactccctcctgtcattattataaggaaaacttcactttttaggtatattgaataatcaatgtatttag----tattataaactagatacattaattat 13325142  T
Q  144 tcaatgtatctaaaaagtgaagtttt 169  Q
    |||||||||||||||| |||||||||    
T  13325141 tcaatgtatctaaaaattgaagtttt 13325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 27939032 - 27939124
Alignment:
Q  91 cattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||  |||||||||||||||| ||||||||||  |  || ||||||||||||||||||||| | || ||||| | ||||||||||    
T  27939032 cattgaataatcaatgtatctagtctttattatagactgggtacattcattattcaatgtatctaaaaaataaaattttactcataatagtga 27939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 43140550 - 43140676
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtc--tttagtatagactggacagtttaattattcaatgta 151  Q
    |||||| ||||||||||||||| | |||| | ||||||||||||||||| ||||||||| ||  |||| |||  | | || |  |||||||||||| |||    
T  43140550 cggtcactattataaacaaaacattacttattagatacattgaataattaatgtatctaatctttttattattaattagatacattaattattcaa-gta 43140648  T
Q  152 tctaaaaagtgaagttttatttataata 179  Q
    |||||||| ||||||||| |||||||||    
T  43140649 tctaaaaaatgaagttttgtttataata 43140676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 43140683 - 43140553
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagt--atagactggacagtttaattattcaatgta 151  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||| |   || |  | ||| | || |  ||||||||||||||||    
T  43140683 cggtcattattataaacaaaacttcattttttagatac-ttgaataattaatgtatctaattaataataaaaagattagatacattaattattcaatgta 43140585  T
Q  152 tctaaaaagtgaagttttatttataatagtga 183  Q
    ||||| |||| | ||||| |||||||||||||    
T  43140584 tctaataagtaatgttttgtttataatagtga 43140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 11322706 - 11322589
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||||| || ||| |||||||| ||||||| || |||| ||||| ||||||||||| || |||| | |||||| ||||||  ||| |  |||||||||    
T  11322706 tactccctccgatcactattataagcaaaact-caatttttagatatattgaataattaatatatccaatctttattatagatcggatacattaattatt 11322608  T
Q  145 caatgtatctaaaaagtga 163  Q
    ||||| |||||||||||||    
T  11322607 caatgcatctaaaaagtga 11322589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 28205791 - 28205858
Alignment:
Q  43 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 110  Q
    |||||||||| ||||   |||||||||||||| || | |||||||||||||||||||||| |||||||    
T  28205791 tatactccctccggttgctattataaacaaaatttaatttttcagatacattgaataattaatgtatc 28205858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 11322589 - 11322706
Alignment:
Q  77 tcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttata 176  Q
    |||||||| |||| |||||||||||| |||||||   ||| || || ||| |||| |  ||||||||||||| |||||||||| || ||||||  |||||    
T  11322589 tcactttttagatgcattgaataattaatgtatccgatctataataaagattggatatattaattattcaatatatctaaaaattg-agttttgcttata 11322687  T
Q  177 atagtgatgagagggagta 195  Q
    ||||||||  |||||||||    
T  11322688 atagtgatcggagggagta 11322706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 1214022 - 1214067
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagt 181  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  1214022 ttaattattcaatatatctaaaaagtagagttttatttataatagt 1214067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 13325116 - 13325159
Alignment:
Q  71 aaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||    
T  13325116 aaaacttcaatttttagatacattgaataattaatgtatctagt 13325159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 28205895 - 28205808
Alignment:
Q  93 ttgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 180  Q
    |||||||||| |||||||||||||||  ||| |||  || |  ||||||||||||||||||| |||| | || |||| ||||||||||    
T  28205895 ttgaataattaatgtatctagtctttgttatggacatgatacattaattattcaatgtatctgaaaaattaaattttgtttataatag 28205808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 158447 - 158493
Alignment:
Q  70 caaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    ||||| ||||||||| ||||||||||||||||| |||||| ||||||    
T  158447 caaaatttcactttttagatacattgaataattaatgtatgtagtct 158493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 158481 - 158448
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagtttt 169  Q
    ||||||||||||||||||||||||||||| ||||    
T  158481 ttaattattcaatgtatctaaaaagtgaaatttt 158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 4132380 - 4132535
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttc-agatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 142  Q
    ||||||| | |||||| |||||||| ||||| |||||||||  ||||||||||||||||| |||||| |||| |||| ||||||||  | |  |||| ||    
T  4132380 atactccatccggtcaatattataagcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaata 4132479  T
Q  143 ttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 198  Q
    ||||||||||||||||||| ||||||| ||||||||| |||  ||||| |||||||    
T  4132480 ttcaatgtatctaaaaagttaagttttgtttataataatgaccagaggaagtatat 4132535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 4132535 - 4132397
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatt 141  Q
    ||||||| |||  ||||||||||||||||||||||| |||||| |||||||||||||| || |||||| |||||| || || | |||  | |  ||||||    
T  4132535 atatacttcctctggtcattattataaacaaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaatt 4132436  T
Q  142 attcaatgtatct-aaaaagtgaagttttatttataata 179  Q
    ||||||||||||| |||||||||| ||||  ||||||||    
T  4132435 attcaatgtatctaaaaaagtgaaattttgcttataata 4132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 26982758 - 26982823
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    ||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  26982758 atacttccttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 26982818 - 26982771
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26982818 ttaattattcaatgtatctaaaaagtgaagttttgcttataatagtga 26982771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 38646164 - 38646315
Alignment:
Q  48 tcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaa-ttattca 146  Q
    ||||| |||| | ||||||||  ||||||  |||||| ||||||||||||||||| || ||| || | |||  ||||||| | | |  |||| |||||||    
T  38646164 tccctccggttactattataagtaaaactcaactttttagatacattgaataattaatatatttaatttttgttatagaccgaatacattaaattattca 38646263  T
Q  147 atgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatat 198  Q
    || |||||||| |||||||||||  ||||||||||||  |||||||||||||    
T  38646264 atatatctaaatagtgaagttttgcttataatagtgaccagagggagtatat 38646315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 41115556 - 41115698
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 155  Q
    ||||| |||||||  ||||||  |||||  |||||||||||| |||| ||||||||| |||||| |||||| | || |  ||||||||  ||||||| ||    
T  41115556 gtcatcattataagtaaaactgtactttgtagatacattgaacaattaatgtatctaatctttattatagagtagatacattaattatgtaatgtatata 41115655  T
Q  156 aaaagtgaagttttatttataatagtgatgagagggagtatat 198  Q
    |||| | |||||||| |||||||||| |  |||| ||||||||    
T  41115656 aaaaattaagttttacttataatagttaccagagagagtatat 41115698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 21857064 - 21857133
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    |||||||| |||||| |||||||| ||||| || |||||| ||| ||||||||||||| |||||||||||    
T  21857064 tactccctccggtcactattataagcaaaagtttactttttagacacattgaataattaatgtatctagt 21857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 45578065 - 45578005
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  45578065 ttaattgttcaatgtatctaaaaagtgaaattttacttataatagtgactagagagagtat 45578005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 34840606 - 34840673
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| |||| |||| ||||| | ||||||    
T  34840606 atatactccctccggtcattattataagcaaaagttcactttttagattcattcaataaatgatgtat 34840673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 43250425 - 43250472
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||    
T  43250425 ttaattattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 24155643 - 24155712
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtatatgtttcct 205  Q
    ||||||||| |||||||||||||| ||||||||| ||||| ||||||||   ||||||||| || |||||    
T  24155643 ttaattatttaatgtatctaaaaattgaagttttgtttatgatagtgatagaagggagtatttgcttcct 24155712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 38646220 - 38646175
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagt 181  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||    
T  38646220 ttaattattcaatgtatctaaaaagttgagttttacttataatagt 38646175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 43250473 - 43250420
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    |||| |||||||| |||||||| |||||| ||||||||||||||||| ||||||    
T  43250473 gtcactattataagcaaaactttactttttagatacattgaataattaatgtat 43250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 24155703 - 24155635
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||||||||  ||| ||| ||||||||||||||| |||| ||||||||| ||||||| || ||||||    
T  24155703 atactcccttctatcactatcataaacaaaacttcaatttttagatacattaaataattaatttatcta 24155635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 38646315 - 38646255
Alignment:
Q  42 atatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 102  Q
    |||||||||||  ||||| |||||||| |||||||||||| || ||||| |||||||||||    
T  38646315 atatactccctctggtcactattataagcaaaacttcactatttagatatattgaataatt 38646255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 11602904 - 11602841
Alignment:
Q  53 tcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    ||||||| |||||||||||||| ||||||||| |||| |||| ||||| | |||||| ||||||    
T  11602904 tcggtcactattataaacaaaagttcactttttagattcattcaataaatgatgtatgtagtct 11602841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 21587839 - 21587897
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||| |||||||| ||||||||||||||  |||| |||| ||||||| |||||||||    
T  21587839 cggtcactattataagcaaaacttcactttcaagatgcattaaataattaatgtatcta 21587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 43250418 - 43250376
Alignment:
Q  141 tattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||||| |||||||  ||||||||||||    
T  43250418 tattcaatgtatctaaaaagtaaagttttgcttataatagtga 43250376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 7107745 - 7107709
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtc 115  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  7107745 actttttagatacattgaataatttatgtatctagtc 7107709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 21857222 - 21857162
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagt 114  Q
    |||||| |||||||| ||||| |||| |||| ||| | ||||||||||| |||||||||||    
T  21857222 cggtcactattataagcaaaaattcattttttagacatattgaataattaatgtatctagt 21857162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 29770437 - 29770401
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtc 115  Q
    |||||| |||||||||||||||| |||||||||||||    
T  29770437 actttttagatacattgaataatgcatgtatctagtc 29770401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 40037646 - 40037686
Alignment:
Q  139 attattcaatgtatctaaaaagtgaagttttatttataata 179  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  40037646 attattcaatgcatttaaaaagtaaagttttatttataata 40037686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 43250374 - 43250418
Alignment:
Q  55 ggtcattattataaacaaaacttcacttttcagatacattgaata 99  Q
    ||||| |||||||| |||||||| |||||| ||||||||||||||    
T  43250374 ggtcactattataagcaaaactttactttttagatacattgaata 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 35239802 - 35239682
Alignment:
Q  41 catatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaat 140  Q
    |||||||||  |||||||| |||||||| ||||| || || ||| |||||||||||||| || |||||||||||||||| ||||||||  | |  |||||    
T  35239802 catatactctgttcggtcactattataaccaaaatttgacattttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaat 35239703  T
Q  141 tattcaatgtatctaaaaagt 161  Q
    |||||||||||||||||||||    
T  35239702 tattcaatgtatctaaaaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 50334923 - 50335030
Alignment:
Q  52 ttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgta 151  Q
    |||||| | |||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| |||||  || | |  ||||||||||||| ||    
T  50334923 ttcggttaatattataaacaaaacttcacattttagatacattgaataattaatgtatctaatctttattataggttgtatacattaattattcaatata 50335022  T
Q  152 tctaaaaa 159  Q
    ||||||||    
T  50335023 tctaaaaa 50335030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 29497471 - 29497369
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 178  Q
    |||||| |||||||||||| |||| || ||||||||||||| | ||||||| | |  ||||||| |||||||||||||||||| || ||||  |||||||    
T  29497471 actttttagatacattgaacaattaatatatctagtctttattgtagactgaatacattaattagtcaatgtatctaaaaagtaaaattttgcttataat 29497372  T
Q  179 agt 181  Q
    |||    
T  29497371 agt 29497369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 32186884 - 32186992
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    ||||| || |||||| | |||||||||||| ||||||||| | |||||| |||||||| |||||| ||||||||| |||| ||| || |  ||||||||     
T  32186884 tactctctccggtcactgttataaacaaaatttcactttttaaatacatggaataattaatgtatatagtctttattataaactagatacattaattatc 32186983  T
Q  145 caatgtatc 153  Q
    |||||||||    
T  32186984 caatgtatc 32186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 35239682 - 35239786
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataat 178  Q
    |||||| ||||||||||||||||| ||||||  ||||| || || ||||| || |  |||| |||||||||||||||||| || || ||||  |||||||    
T  35239682 actttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatctaaaatgtcaaattttggttataat 35239781  T
Q  179 agtga 183  Q
    |||||    
T  35239782 agtga 35239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 50334975 - 50334932
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataata 179  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  50334975 ttaattattcaatgtatctaaaatgtgaagttttgtttataata 50334932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 29497371 - 29497471
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaag 160  Q
    |||||||| ||||| || |||||| ||||||||||| ||||| ||||||  |||||  | || ||||| || |  |||||| ||||||||||||||||||    
T  29497371 tattataagcaaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatctaaaaag 29497470  T
Q  161 t 161  Q
    |    
T  29497471 t 29497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 32186992 - 32186896
Alignment:
Q  87 gatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||| |||||| ||||||||||| | || || |||||  | |  |||||||||| |||||| ||||||||||| |||| ||||||| |||||    
T  32186992 gatacattggataattaatgtatctagtttataataaagactatatacattaattattccatgtatttaaaaagtgaaattttgtttataacagtga 32186896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 36344582 - 36344518
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgta 108  Q
    ||||||||| || ||| |||||||||||||| |  |||||| ||||||||||||||||| |||||    
T  36344582 atactccctccgatcaatattataaacaaaattatactttttagatacattgaataattaatgta 36344518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 36344522 - 36344582
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    ||||||||||||||||||||||||||  | |||| ||||||||| ||||  ||||||||||    
T  36344522 ttaattattcaatgtatctaaaaagtataattttgtttataatattgatcggagggagtat 36344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 1779488 - 1779553
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtat 109  Q
    ||||||||| ||||||   ||||||||||||| | |||||| || |||||||||||||| ||||||    
T  1779488 atactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtat 1779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 11532681 - 11532722
Alignment:
Q  290 caagagtttgcctttgtaatttcatgtgacaaagttcaaata 331  Q
    |||||||||| ||||||||||||||| || ||||||||||||    
T  11532681 caagagtttgactttgtaatttcatgagataaagttcaaata 11532722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 379188 - 379152
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtc 115  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  379188 actttttagatacattgaataatttatgtatctagtc 379152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 39836955 - 39836999
Alignment:
Q  140 ttattcaatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    ||||| |||| ||||||||||| || |||||||||||||||||||    
T  39836955 ttattgaatgaatctaaaaagtaaacttttatttataatagtgat 39836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 8352129 - 8352278
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattat 143  Q
    |||||||||  ||||| |||||||| |||||||||| |||| ||||||||||||| ||| ||||||||| | |||| |||||| |  | |  ||||||||    
T  8352129 atactccctctggtcactattataagcaaaacttcattttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattat 8352228  T
Q  144 tcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggag 193  Q
    ||||| ||||||||||| ||||||||  |||||||| |||  ||||||||    
T  8352229 tcaatatatctaaaaagggaagttttgcttataataatgacaagagggag 8352278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 8352269 - 8352129
Alignment:
Q  56 gtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatcta 155  Q
    ||||||||||||| ||||||||| ||||| ||||| ||||||||||| |||||| || ||| || || | | | || |  ||||| ||||||||||||||    
T  8352269 gtcattattataagcaaaacttccctttttagatatattgaataattaatgtatttattctataataaatattagatacattaatcattcaatgtatcta 8352170  T
Q  156 aaaagtgaagttttatttataatagtgatgagagggagtat 196  Q
    |||| |||||||||  ||||||||||||  |||||||||||    
T  8352169 aaaaatgaagttttgcttataatagtgaccagagggagtat 8352129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 26468289 - 26468419
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattatt 144  Q
    |||||| |||||||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||| | |||| |||||||   | |  | |||||||    
T  26468289 tactccattcggtcactattataaacaaaatttcactttttaaatacattgaataattaatgtatctaatttttattatagaccatatatatcaattatt 26468388  T
Q  145 caatgtatctaaaaagtgaagttttatttat 175  Q
    ||||||||  |||||||||| ||||| ||||    
T  26468389 caatgtataaaaaaagtgaaattttacttat 26468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 14773852 - 14773765
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaat 148  Q
    |||||||| ||||| || |||||| ||||| |||| |||||| ||||||||||||| || ||||||||||| |   ||||||||||||    
T  14773852 tattataagcaaaatttaactttttagatatattgtataattaatgtatctagtctgtattatagactggatacaataattattcaat 14773765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 26468348 - 26468301
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  26468348 ttaattattcaatgtatttaaaaagtgaaattttgtttataatagtga 26468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 31635871 - 31635752
Alignment:
Q  64 tataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtga 163  Q
    ||||| ||||| ||||||||| ||||||||||||||| | || |||||||||| || ||   || | | |  || |||||||||||||| ||||||||||    
T  31635871 tataagcaaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtatataaaaagtga 31635772  T
Q  164 agttttatttataatagtga 183  Q
    ||||||| || |||| ||||    
T  31635771 agttttacttgtaatggtga 31635752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 43731258 - 43731155
Alignment:
Q  51 cttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgt 150  Q
    ||||||| |||||||||| ||||| |||| |||| |||||||||||||| || ||||||||| | |||| || | ||| || |  ||||||||| |||||    
T  43731258 cttcggttattattataagcaaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgt 43731159  T
Q  151 atct 154  Q
    ||||    
T  43731158 atct 43731155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 31635766 - 31635864
Alignment:
Q  71 aaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagtttt 169  Q
    |||||||||||||| | ||||||||||||||  ||||||   ||  ||| |||||||| || |  ||| ||||||||||||||||||||||||| ||||    
T  31635766 aaaacttcactttttatatacattgaataataaatgtattcggtgcttattatagactagatatattagttattcaatgtatctaaaaagtgaaatttt 31635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 30800263 - 30800186
Alignment:
Q  106 gtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||| |||||| ||||||||||| |  ||||| |||||||||||||| ||||| || |||| ||||||| |||||    
T  30800263 gtatctaatctttattatagactggatacattaatcattcaatgtatctagaaagtaaaattttgtttataagagtga 30800186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 5368920 - 5368854
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 110  Q
    ||||||||| |||||||  |||||| ||||| || |||||| |||| |||||||||||| |||||||    
T  5368920 atactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc 5368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 1659231 - 1659280
Alignment:
Q  136 ttaattattcaatgtatctaaaaag-tgaagttttatttataatagtgat 184  Q
    ||||||||| ||||||||||||||  |||| |||||||||||||||||||    
T  1659231 ttaattatttaatgtatctaaaaaaatgaaattttatttataatagtgat 1659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 3384319 - 3384356
Alignment:
Q  146 aatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  3384319 aatgtatctaaaaagtgaatttttatttatattagtga 3384356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 30800342 - 30800289
Alignment:
Q  57 tcattattataaacaaaacttcacttttcagatacattgaataattcatgtatc 110  Q
    ||||| ||||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  30800342 tcattgttataaacaaaactctactttttagatatattgaataattaatgtatc 30800289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 32796836 - 32796889
Alignment:
Q  140 ttattcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggag 193  Q
    ||||| |||| |||||||||||||| |||| ||||||||||||||  |||||||    
T  32796836 ttattaaatgaatctaaaaagtgaatttttgtttataatagtgatcggagggag 32796889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 39969819 - 39969771
Alignment:
Q  138 aattattcaatgtatct--aaaaagtgaagttttatttataatagtgat 184  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  39969819 aattattcaatgtatcttaaaaaaatgaagttttatttataatattgat 39969771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 38834601 - 38834677
Alignment:
Q  40 tcatatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    ||||||||||||| |||||| |||||||| ||||| || | |||| |||| |||| ||||| | |||||| ||||||    
T  38834601 tcatatactccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtct 38834677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 8996900 - 8996792
Alignment:
Q  43 tatactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaatta 142  Q
    ||||||| || |||||| |||||||| |||||||  |||||  ||||||||||||||||  |||||| ||||||||| |||||||| || |  |||||||    
T  8996900 tatactctctccggtcactattataagcaaaactctactttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaatta 8996801  T
Q  143 ttcaatgta 151  Q
    |||||||||    
T  8996800 ttcaatgta 8996792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 43100744 - 43100801
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataatt 102  Q
    ||||||||||||||| |||||||| ||||| |||| |||| |||||||||||||||||    
T  43100744 tactcccttcggtcactattataagcaaaaattcattttttagatacattgaataatt 43100801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 8717540 - 8717643
Alignment:
Q  81 ttttcagatacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatag 180  Q
    |||| ||||||||| ||||||| |||||| ||||||||| |||| ||| || |  ||| ||||||||||||| |||||| | || ||| | |||||||||    
T  8717540 tttttagatacattaaataattaatgtatttagtctttattatatactagatacattatttattcaatgtatttaaaaaattaaatttaacttataatag 8717639  T
Q  181 tgat 184  Q
    ||||    
T  8717640 tgat 8717643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 8996792 - 8996886
Alignment:
Q  89 tacattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||| ||||||||||||| || || |||||  | |  || ||||||||||||||||| |||||  ||||||  ||||||||||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtga 8996886  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 10495780 - 10495722
Alignment:
Q  54 cggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatcta 112  Q
    |||||| |||||||| ||||| ||||||||| |||||||||||||| || |||||||||    
T  10495780 cggtcactattataagcaaaatttcactttttagatacattgaatatttaatgtatcta 10495722  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 8996734 - 8996789
Alignment:
Q  61 tattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    |||||||| ||||| |||  |||| ||||||||||||||||| |||||||||||||    
T  8996734 tattataagcaaaatttcggtttttagatacattgaataattaatgtatctagtct 8996789  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 10495730 - 10495777
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||||    
T  10495730 ttaaatattcaatgtatctaaaaagtgaaattttgcttataatagtga 10495777  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 39792136 - 39792211
Alignment:
Q  91 cattgaataattcatgtatctagtctttagtatagactggacagtttaattattcaatgtatctaaaaagtgaagt 166  Q
    |||| ||||||| ||||||||||| |||| |||||| | || |  ||||||||||| |||||||||||| ||||||    
T  39792136 cattaaataattaatgtatctagtttttattatagattagatacattaattattcattgtatctaaaaaatgaagt 39792211  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 43100803 - 43100756
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    |||||||||||||||||||||||| |||| ||||  ||||||||||||    
T  43100803 ttaattattcaatgtatctaaaaaatgaatttttgcttataatagtga 43100756  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 13953911 - 13953862
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  13953911 tactccttccggtcactattataaacaaaacttcacattttagatacatt 13953862  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 13953862 - 13953899
Alignment:
Q  146 aatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  13953862 aatgtatctaaaatgtgaagttttgtttataatagtga 13953899  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 14095118 - 14095069
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  14095118 tactccttccggtcactattataaacaaaacttcacattttagatacatt 14095069  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 14095069 - 14095106
Alignment:
Q  146 aatgtatctaaaaagtgaagttttatttataatagtga 183  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  14095069 aatgtatctaaaatgtgaagttttgtttataatagtga 14095106  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 8996777 - 8996729
Alignment:
Q  136 ttaattattcaatgtatctaaaaagtgaagttttatttataatagtgat 184  Q
    ||||||||||||||||||||||||  ||| ||||  |||||||||||||    
T  8996777 ttaattattcaatgtatctaaaaaccgaaattttgcttataatagtgat 8996729  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 20218692 - 20218620
Alignment:
Q  44 atactcccttcggtcattattataaacaaaacttcacttttcagatacattgaataattcatgtatctagtct 116  Q
    ||||||||| | |||| |||||||| ||| |  |||||||| |||| |||||||||||| ||||||| |||||    
T  20218692 atactccctcctgtcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtct 20218620  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 20493307 - 20493367
Alignment:
Q  282 ttcattgacaagagtttgcctttgtaatttcatgtgacaaagttcaaatatattcttgtta 342  Q
    ||||||| ||| |||||| |||||||||||||||  |||||||| ||||| | ||||||||    
T  20493307 ttcattggcaaaagtttgactttgtaatttcatggaacaaagtttaaatagactcttgtta 20493367  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 34020 - 33971
Alignment:
Q  45 tactcccttcggtcattattataaacaaaacttcacttttcagatacatt 94  Q
    ||||| |||| |||||||||| || ||||||||||||||| |||||||||    
T  34020 tactcgcttctgtcattattacaagcaaaacttcactttttagatacatt 33971  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 77378 - 77414
Alignment:
Q  79 acttttcagatacattgaataattcatgtatctagtc 115  Q
    |||||||||||||||||||||||| |||||| |||||    
T  77378 acttttcagatacattgaataatttatgtatgtagtc 77414  T

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