View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_high_7 (Length: 252)
Name: NF18000_high_7
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_high_7 |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 28600579 - 28600805
Alignment:
| Q |
16 |
aaaagatggtaactagtttctgtgcaagcataagtgcatcagctagtcatagatggaccacactttcatctttgaatgagactggagtcagagttactgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28600579 |
aaaagatggtaactagtttctgtgcaagcataagtgcatcagctagtcatagatggaccacactttcatctttgaatgagactggagtcagagttactgt |
28600678 |
T |
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| Q |
116 |
taggaagagtactgagcttggtcagcctagtggtgttgtgctatgtgcagctactaccatttggctacctctccctccacaaactgttttcaatttcttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28600679 |
taggaagagtactgagcttggtcagcctagtggtgttgtgctatgtgcagctactaccatttggttacctctccctccacaaactgttttcaatttcttc |
28600778 |
T |
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| Q |
216 |
aaagatgaaaggaaaagatcacaggtt |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28600779 |
aaagatgaaaggaaaagatcacaggtt |
28600805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 2654 - 2760
Alignment:
| Q |
136 |
gtcagcctagtggtgttgtgctatgtgcagctactaccatttggctacctctccctccacaaactgttttcaatttcttcaaagatgaaaggaaaagatc |
235 |
Q |
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||||||||| ||||| |||||| | ||| |||||| ||||||||| ||||| |||||||| ||||| ||||||||||| || |||||||||||| |||| |
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| T |
2654 |
gtcagcctaatggtggggtgctaagcgcatctactatcatttggctgcctcttcctccacagactgtgttcaatttcttgaacgatgaaaggaaacgatc |
2753 |
T |
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| Q |
236 |
acaggtt |
242 |
Q |
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|||||| |
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| T |
2754 |
tcaggtt |
2760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 2562 - 2638
Alignment:
| Q |
20 |
gatggtaactagtttctgtgcaagcataagtgcatcagctagtcatagatggaccacactttcatctttgaatgaga |
96 |
Q |
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||||||||||| |||||||| ||| |||| || ||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
2562 |
gatggtaactaatttctgtgaaagtataaatggatcagctagtcatagatggaccacattatcaactttgaatgaga |
2638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 9277237 - 9277343
Alignment:
| Q |
136 |
gtcagcctagtggtgttgtgctatgtgcagctactaccatttggctacctctccctccacaaactgttttcaatttcttcaaagatgaaaggaaaagatc |
235 |
Q |
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||||||||| ||||| |||||| | ||| |||||| ||||||||| ||||| |||||||| ||||| ||||||||||| || |||||||||||| |||| |
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| T |
9277237 |
gtcagcctaatggtgaggtgctaagcgcatctactatcatttggctgcctcttcctccacagactgtgttcaatttcttgaacgatgaaaggaaacgatc |
9277336 |
T |
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| Q |
236 |
acaggtt |
242 |
Q |
| |
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|||||| |
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| T |
9277337 |
tcaggtt |
9277343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 9294889 - 9294995
Alignment:
| Q |
136 |
gtcagcctagtggtgttgtgctatgtgcagctactaccatttggctacctctccctccacaaactgttttcaatttcttcaaagatgaaaggaaaagatc |
235 |
Q |
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||||||||| ||||| |||||| | ||| |||||| ||||||||| ||||| |||||||| ||||| ||||||||||| || |||||||||||| |||| |
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| T |
9294889 |
gtcagcctaatggtgaggtgctaagcgcatctactatcatttggctgcctcttcctccacagactgtgttcaatttcttgaacgatgaaaggaaacgatc |
9294988 |
T |
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| Q |
236 |
acaggtt |
242 |
Q |
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|||||| |
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| T |
9294989 |
tcaggtt |
9294995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 9277145 - 9277221
Alignment:
| Q |
20 |
gatggtaactagtttctgtgcaagcataagtgcatcagctagtcatagatggaccacactttcatctttgaatgaga |
96 |
Q |
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||||||||||| |||||||| ||| |||| || ||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
9277145 |
gatggtaactaatttctgtgaaagtataaatggatcagctagtcatagatggaccacattatcaactttgaatgaga |
9277221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 9294797 - 9294873
Alignment:
| Q |
20 |
gatggtaactagtttctgtgcaagcataagtgcatcagctagtcatagatggaccacactttcatctttgaatgaga |
96 |
Q |
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||||||||||| |||||||| ||| |||| || ||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
9294797 |
gatggtaactaatttctgtgaaagtataaatggatcagctagtcatagatggaccacattatcaactttgaatgaga |
9294873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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