View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_low_1 (Length: 648)
Name: NF18000_low_1
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_low_1 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 141 - 637
Target Start/End: Original strand, 5063707 - 5064240
Alignment:
| Q |
141 |
agtggctgctttgatgtctattaagaataagatgaatgatgggttgcatgctatgaatggttgggatattaattcggttgatccttgtacttggaatatg |
240 |
Q |
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| T |
5063707 |
agtggctgctttgatgtctatgaagaataagatgaatgatgggttgcatgctatgaatggttgggatattaattcggttgatccttgtacttggaatatg |
5063806 |
T |
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| Q |
241 |
gttggttgttcttctgagggttatgtcatttccttgtaagt---ttttctggtttctatttgtttcagtagtgacaaaaattgattttgaattactcaat |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5063807 |
gttggttgttcttctgagggttatgtcatttccttgtaagtttgttttctggtttctatttgttttagtagtgacaaaaattgattttgaattactcaat |
5063906 |
T |
|
| Q |
338 |
tatgcaaaatagatataagctagctat----------------aagtgagttataaatgtaaaatagatgtaataatgagttgaacaata---------- |
411 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5063907 |
tatgcaaaatagatataagctagctataagtgagttgaatgtaaagtgagttataaatgtaaaatagatgtaataatgagttggacaataaattcgagag |
5064006 |
T |
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| Q |
412 |
--------aattgtagagactaaaactccaatttctagcttcatgttagaatcaattctactcaataacataaacattcaagtcaattaatactttacat |
503 |
Q |
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| T |
5064007 |
tgaaaatcaattgtagagactaaaactccaatttctagcttcatgttagaatcaattctactcaataacataaacattcaggtcaattaatacttcacat |
5064106 |
T |
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| Q |
504 |
ttttaaatcaattttggctactccaaaatttaannnnnnnggctgtgaggaatgtaacagattttgcagtttagcattgtcaatgttattcatggaatta |
603 |
Q |
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| T |
5064107 |
ttttaaatcaattttggctcctccaaaatttaatttttttggctgtgaggaatgtaacagattttgcagtttagcattgtcaatgttattcatggaatta |
5064206 |
T |
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| Q |
604 |
cttgttcagtttgtaaagttattgatatgtgatg |
637 |
Q |
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| T |
5064207 |
cttgttcagtttgtaaagttattgatatgtgatg |
5064240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 5063585 - 5063646
Alignment:
| Q |
19 |
gtcttctctctccaaagggtgttaactatgaaggtttcattcacattttcaactatgagaga |
80 |
Q |
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| T |
5063585 |
gtcttctctctccaaagggtgttaactatgaaggtttcattcacattttcaactatgagaga |
5063646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 11511003 - 11510953
Alignment:
| Q |
408 |
aataaattgtagagactaaaactccaatttctagcttcatgttagaatcaa |
458 |
Q |
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|||||||||||||| | |||||||||| ||||||||||| | ||||||||| |
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| T |
11511003 |
aataaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaa |
11510953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 3043074 - 3043112
Alignment:
| Q |
425 |
aaaactccaatttctagcttcatgttagaatcaattcta |
463 |
Q |
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| T |
3043074 |
aaaactccaatttctagcttcatgttagaatcaattcta |
3043112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 33608536 - 33608499
Alignment:
| Q |
425 |
aaaactccaatttctagcttcatgttagaatcaattct |
462 |
Q |
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| T |
33608536 |
aaaactccaacttctagcttcaagttagaatcaattct |
33608499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 42724439 - 42724403
Alignment:
| Q |
425 |
aaaactccaatttctagcttcatgttagaatcaattc |
461 |
Q |
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|||||| ||||||||||||||| |||||||||||||| |
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| T |
42724439 |
aaaacttcaatttctagcttcaagttagaatcaattc |
42724403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 30926831 - 30926869
Alignment:
| Q |
425 |
aaaactccaatttctagcttcatgttagaatcaattcta |
463 |
Q |
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| T |
30926831 |
aaaactccaatttctagcttcaagttagaatccattcta |
30926869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 217966 - 218003
Alignment:
| Q |
414 |
ttgtagagactaaaactccaatttctagcttcatgtta |
451 |
Q |
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| T |
217966 |
ttgtagagacaaaaactccaaattctagcttcatgtta |
218003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 18413 - 18377
Alignment:
| Q |
425 |
aaaactccaatttctagcttcatgttagaatcaattc |
461 |
Q |
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|||||| ||||||||||||||| |||||||||||||| |
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| T |
18413 |
aaaacttcaatttctagcttcaagttagaatcaattc |
18377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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