View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_low_12 (Length: 235)
Name: NF18000_low_12
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43210755 - 43210538
Alignment:
| Q |
1 |
gttgtcgatgtcgtcgtactctttggcatagctcttaaaacatatcaaacatgttttataaactcacgtaacttacgtttctatactaaatttctcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43210755 |
gttgtcgatgtcgtcgtactctttggcatagctcttaaaacatatcaaacttgttttataaactcacgtaacttacgtttctatactaaatttctcaact |
43210656 |
T |
|
| Q |
101 |
atctattgcgaaataataaattcatgttcctataatcgtcatcctcttcttcttcttttctcaaagcacattaaagcactcctttaaaacctcatcaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43210655 |
atctattgcgaaataataaattcatgttcctataatcgtcgtcctcttct---tcttttctcaaagcacattaaagcactcctttaaaacctcatcaccc |
43210559 |
T |
|
| Q |
201 |
aaccatggttcatgccaaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43210558 |
aaccatggttcatgccaaaat |
43210538 |
T |
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