View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_low_13 (Length: 230)
Name: NF18000_low_13
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 9772464 - 9772267
Alignment:
| Q |
15 |
atatatgaaatggttcgttgaaaataaaacttaatacaatattcaaataatactaagataaaattacattaaattagattagacaaacaaatatagcata |
114 |
Q |
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| T |
9772464 |
atatatgaaatggttcgttgaaaataaaacttaatacaatattcaaataatactaagataaaattacattaaattagattagagaaacaaatatagcata |
9772365 |
T |
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| Q |
115 |
agttaatggtagatactcgtcataatctactcagacatacgtagaaatgaagttgttctaaatcaaactattattctgtaaacatgtattgtacatcc |
212 |
Q |
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| T |
9772364 |
agttaatggtagatactcgtcataatctactcagacatacgtagaaatgaagttgttctaaatcaaactattattctgcaaacatgtattgtacatcc |
9772267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 9772602 - 9772549
Alignment:
| Q |
20 |
tgaaatggttcgttgaaaataaaacttaatacaatattcaaataatactaagat |
73 |
Q |
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| T |
9772602 |
tgaaatggtttgttgaaaataaaacctaatacaatatttaaataatgctaagat |
9772549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 22656339 - 22656419
Alignment:
| Q |
25 |
tggttcgttgaaaataaaacttaatacaatattcaaataatactaagataaaattacattaaattagattagacaaacaaa |
105 |
Q |
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| T |
22656339 |
tggttcgttgaaaataatatgtaatccaacattcaaataataaatagataaaattacattaaatttgattagacaaacaaa |
22656419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 30289346 - 30289299
Alignment:
| Q |
46 |
taatacaatattcaaataatactaagataaaattacattaaattagat |
93 |
Q |
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| T |
30289346 |
taatacaacattaaaataatactaagataaaattacattaaattagat |
30289299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 41334875 - 41334797
Alignment:
| Q |
67 |
ctaagataaaattacattaaattagattagacaaacaaatatagcataagttaatggtagatactcgtcataatctactcagac |
150 |
Q |
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| T |
41334875 |
ctaagatacaaatacattaaattagat-----aaacaaacatgacataagttaattgtagatacttatcataatctactcagac |
41334797 |
T |
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