View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_low_3 (Length: 446)
Name: NF18000_low_3
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Complemental strand, 17443112 - 17442696
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443112 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
17443013 |
T |
|
| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443012 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
17442913 |
T |
|
| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442912 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
17442813 |
T |
|
| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaacgccaccaccatttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17442812 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaacaccaccaccatttc |
17442713 |
T |
|
| Q |
412 |
aatgtagatactgcaat |
428 |
Q |
| |
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||||||||||||||||| |
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| T |
17442712 |
aatgtagatactgcaat |
17442696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Original strand, 3059088 - 3059504
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059088 |
atgaaagttgtgaatcaaattagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
3059187 |
T |
|
| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059188 |
agatttttgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
3059287 |
T |
|
| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059288 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
3059387 |
T |
|
| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaacgccaccaccatttc |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3059388 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaacaccaccaccatttc |
3059487 |
T |
|
| Q |
412 |
aatgtagatactgcaat |
428 |
Q |
| |
|
||||||||||||||||| |
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| T |
3059488 |
aatgtagatactgcaat |
3059504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Original strand, 4873731 - 4874147
Alignment:
| Q |
12 |
atgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873731 |
atgaaagttgtgaatcaaataagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtcttggtggttttacctgaaagattcgaatcaa |
4873830 |
T |
|
| Q |
112 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagacttttgagaca |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4873831 |
agatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttcaagctcaagagcagagaagaattttgagaca |
4873930 |
T |
|
| Q |
212 |
agaagaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873931 |
agaggaagcatcagaaacagctttacaagtcaaacacaaaggaaaatccatagcaaccaaaggtgaaaagaaatttgttggagagcactctgggaaagat |
4874030 |
T |
|
| Q |
312 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaacgccaccaccatttc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4874031 |
acaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgttggtacaaaggaaaaaaaccaccaccatttc |
4874130 |
T |
|
| Q |
412 |
aatgtagatactgcaat |
428 |
Q |
| |
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||||||||||||||||| |
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| T |
4874131 |
aatgtagatactgcaat |
4874147 |
T |
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