View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18000_low_5 (Length: 332)
Name: NF18000_low_5
Description: NF18000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18000_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 26710882 - 26711062
Alignment:
| Q |
80 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagaataaa-gagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
178 |
Q |
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| T |
26710882 |
aaaatttgcaaagaaaaccaatagcataatacatttaagaagtataaaagagtgtaatacacaacaacaatcaacaaaggagatacataatcaaccaaat |
26710981 |
T |
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| Q |
179 |
atataaagctatttccatgtcggcatctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacatt |
259 |
Q |
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| T |
26710982 |
atataaagctatttctatgtcggcacctctatatcagtagctagaagtaagtcttccatggccactggttttaaacacatt |
26711062 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 26711083 - 26711122
Alignment:
| Q |
275 |
tgagtttagccgaataatatcattcttgaaatgatacata |
314 |
Q |
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| T |
26711083 |
tgagtttagccgaataatatcattcttgaaatgatacata |
26711122 |
T |
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