View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18001_high_1 (Length: 403)
Name: NF18001_high_1
Description: NF18001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18001_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 36 - 393
Target Start/End: Original strand, 24255016 - 24255368
Alignment:
| Q |
36 |
gtaaaaatagagtaatttatatggaccgttggatcgcatagccttgtacaacacgaaaggcaggcagctctacacaactcagccaagtagttgatagtat |
135 |
Q |
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| T |
24255016 |
gtaaaaatagaataatttatatggaccgttggatcgcatagccttgtacaacacgaaaggcagcc----ctacacaactcagccaagtagttgatagtat |
24255111 |
T |
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| Q |
136 |
aaaaagaagacggtgtacttgtaagattgttttcgtgaatcaaatccctaaatccaatataaaccattggagtagtaaagtttctcttgtttttcttcat |
235 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24255112 |
aaaaagaagacggtgtacttgtaa-attgttttcgtgaatcaaatccctaaatccaatataaaccattggagtagtaaagtttctcttgtttttcttcat |
24255210 |
T |
|
| Q |
236 |
tacccaattcaactcaaattttcaaccctaatcaggtacgcattcaacgacgcaaccgaaccgtgaactctacccacgccaccaccggaaaatccatctc |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24255211 |
tacccaattcaactcaaattttcaaccctaatcaggtacgcattcaacgacgcaaccgaaccgtgaactctactcacgccaccaccggaaaatccatctc |
24255310 |
T |
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| Q |
336 |
caccgtcaggttccattannnnnnnnnnnnncttcgcgttcattttttgtatgattaa |
393 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24255311 |
caccgtcaggttccattactctatccctctccttcgcgttcattttttgtatgattaa |
24255368 |
T |
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