View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18001_high_4 (Length: 304)
Name: NF18001_high_4
Description: NF18001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18001_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 7374287 - 7374584
Alignment:
| Q |
1 |
ttcttctcctctcatgaaacttctcgaacgttcaaaagcaatgttcccattccaacaacatcctcgtatctagtctagtattataaaatctcactcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374287 |
ttcttctcctctcatgaaacttctcgaacattcaaaatcaatgttcccaatccaacaacatcctcgtatctagtctagtattataaaatctcactcaatt |
7374386 |
T |
|
| Q |
101 |
tttcttccaaaatcacacaacaaacaatcttaattctagaaacagaaacattactcacattgattaacaaaacatgtttcatttgaacaacaacagaaca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374387 |
tttcttccaaaaacacacaacaaacaattttaattccagaaacagaaacattactcacattgattaacaaaacatgtttcatttgaacaacaacagaaca |
7374486 |
T |
|
| Q |
201 |
tcacaac---cttccttgtatgggacacaatggaattttcctcatt---acaagaaagcacaatcaccgtcgaaggtggtttcaattcctgttcattt |
292 |
Q |
| |
|
||||||| |||||||||| || || |||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7374487 |
tcacaaccttcttccttgtacggcacccaatggaattatcctcgttacaacaagaaagcacaatcaccatcgaaggtggtttcaattccggttcattt |
7374584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 7279393 - 7279255
Alignment:
| Q |
163 |
attaacaaaacatgtttcatttgaacaacaaca---gaacatcacaaccttc---cttgtatgggacacaatggaattttcctcattacaa---gaaagc |
253 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || || |||||||||| ||||| |||||| |||||| |
|
|
| T |
7279393 |
attaacacaacatgtttcatttgaacaacaacaacagaacatcacaaccttcttccttgtacggcacccaatggaattatcctcgttacaacaagaaagc |
7279294 |
T |
|
| Q |
254 |
acaatcaccgtcgaaggtggtttcaattcctgttcattt |
292 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7279293 |
acaatcaccatcgaaggtggtttcaattccggttcattt |
7279255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University