View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18001_low_2 (Length: 402)
Name: NF18001_low_2
Description: NF18001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18001_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 31439858 - 31439492
Alignment:
| Q |
19 |
ctgcaagactggtgaatccggcctagatggataacagaagtatatgtctttaaattcaatttctcctctcacatgtgataaagcctttcctttcttctct |
118 |
Q |
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| T |
31439858 |
ctgcaagactggtgaatctggcctagatggataacagaagtatatgtctttaaattcaatttctcctctcacatgtgataaagcctttcctttcttctct |
31439759 |
T |
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| Q |
119 |
tcagaatctataactggcaccctatcaatcatttcataaaggcgagtgaccgcggaacttgcctccatgatggcagttaaatttggaagtgcacttaaaa |
218 |
Q |
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| T |
31439758 |
tcagaatctataactggcaccctatcaatcatttcataaaggcgagtgaccgcggaacttgcctccatgatggcagttaaatttggaagtgcacttaaaa |
31439659 |
T |
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| Q |
219 |
tgctcctgaaaaattcatcaaagttaaacatattatttttgctcttaaccctccgatcttgttacaagcgcgttttgaagttaaacataatagtataaca |
318 |
Q |
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| T |
31439658 |
tgctcctgaaaaattcatcaaagttaaacatattattttt-ctcttaaccctccgatcttgttacaggcgcgttttgaagttaaacataatagtataaca |
31439560 |
T |
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| Q |
319 |
tgcaatattaaaaaagtgattataaaactagaatataagtaatgataaaatcacttacagtcctccca |
386 |
Q |
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| T |
31439559 |
tgcaatattaaaaaagtgattataaaactagaatataagtaatgataaaatcacttacagtcctccca |
31439492 |
T |
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