View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18001_low_5 (Length: 242)
Name: NF18001_low_5
Description: NF18001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18001_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 54249476 - 54249686
Alignment:
| Q |
18 |
gttgtgtgattgtgttcaaaacagggtcttttggagggacagttccagtattttgaaacccaataatacactacttgcggtgctggatgtcacctcaccc |
117 |
Q |
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| T |
54249476 |
gttgtgtgattgtgttcaaaacagggtcttttggagggacagttccagtattttgaaacccaataatacactacttgcggtgctggatgtcacctcaccc |
54249575 |
T |
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| Q |
118 |
accatcacctacccacaccttcaacttaaagaccacatcattgatttggacaatacttataaaatgcacaaatttatactaagcgccgaaatagcatagc |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54249576 |
accatcacctacccacaccttcaactt-aagaccacatcattgatttggacaatacttataaaatgcacaaatttatactaagcgccgaaatagcatagc |
54249674 |
T |
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| Q |
218 |
aacaaccaagta |
229 |
Q |
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| T |
54249675 |
aacaaccaagta |
54249686 |
T |
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