View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18002_high_10 (Length: 388)
Name: NF18002_high_10
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 11806677 - 11807061
Alignment:
| Q |
1 |
tccagtagcatcagataggtcatgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11806677 |
tccagtagcatcaaataggtcatgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaa |
11806776 |
T |
|
| Q |
101 |
aggaaacttcgagtcaataattgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
11806777 |
aggaaacttcgagtcaataattgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcacgtttgacagttacaaaatatggtacc |
11806876 |
T |
|
| Q |
201 |
aactgtttcttcgaaaatttaagttttttcagctcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattag |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11806877 |
aactgtttcttcgaaaatgtaagtttcttcagctcaaaagtcaacattgaactcagaccagttgctaaatccacgacaatcccattttcactcaaattag |
11806976 |
T |
|
| Q |
301 |
gatcaaaagttgaccatggtattccagcggtacaatttatcactgcatcatatttcctaccagacggactcttctgtgctgctcc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
11806977 |
gatcaaaagttgaccatggtattccagcggtaaaatttatcactgcatcatatttcctaccagacggactcttcagtgatgctcc |
11807061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 38 - 374
Target Start/End: Original strand, 11837986 - 11838322
Alignment:
| Q |
38 |
aatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgagttttcca |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11837986 |
aatgatttttccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagagtcgataattgtcttgagttttcca |
11838085 |
T |
|
| Q |
138 |
tccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaatttaagttttttcagctcaa |
237 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| | || |||||||||| | |||| |||||| | ||||||||||| ||||||| ||||| ||| |
|
|
| T |
11838086 |
tccttcactagttgagcaagatgttccaagccctcacgcttaacagttacaacaaatggcaccaaccgcttcttcgaaaaagtaagtttcttcagtgcaa |
11838185 |
T |
|
| Q |
238 |
aagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcggtacaatt |
337 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
11838186 |
aagtcaacattgaactaggaccaggtgttaaatccacgacaactcctttttcactcaaattaggatcaaaagttgaccacggtattccagtggtgcaatg |
11838285 |
T |
|
| Q |
338 |
tatcactgcatcatatttcctaccagacggactcttc |
374 |
Q |
| |
|
||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
11838286 |
tattactgcatcatattttttaccagatggactcttc |
11838322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 11855242 - 11855590
Alignment:
| Q |
22 |
atgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataat |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
11855242 |
atgcctattgctccactatgatttttccagtagcatggccatcgatgctcttagcccaagcatcttcagctttgctcaaaggaaacttggagtcaataat |
11855341 |
T |
|
| Q |
122 |
tgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaattta |
221 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||| |||||||||| | ||||| || | | || ||| |||| ||||||||||| || |
|
|
| T |
11855342 |
tgtcttgagttttccatccttcactaactgaccgagatgttctaagccctcgcgagttggagttaaaagaaacggcacccactgcttcttcgaaaaggta |
11855441 |
T |
|
| Q |
222 |
agttttttcagctcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggta |
321 |
Q |
| |
|
||||| |||| | |||||||| ||||||| || | |||| || || |||| | |||| ||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
11855442 |
agtttcttcaccgcaaaagtccacattgatctcgggccaggtgttatatccgctacaaccccattttccgacaaattaggctcaaaaactgaccatggta |
11855541 |
T |
|
| Q |
322 |
ttccagcggtacaatttatcactgcatcatatttcctaccagacggact |
370 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
11855542 |
ttccagcagtacaatgtatcactacatcatatttcctaccagaaggact |
11855590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 385
Target Start/End: Original strand, 11430302 - 11430656
Alignment:
| Q |
31 |
gctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgag |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||| || |
|
|
| T |
11430302 |
gctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtcttaag |
11430401 |
T |
|
| Q |
131 |
ttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaatttaagttttttc |
230 |
Q |
| |
|
||||||||| ||||| | || || |||||||| |||||||| | ||||| |||||||| | | |||||| || ||||| ||||| ||||||| ||| |
|
|
| T |
11430402 |
ttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaataaaaggtacccacaacttctttgaaaaggtaagtttcttc |
11430501 |
T |
|
| Q |
231 |
agctcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcgg |
330 |
Q |
| |
|
| | || | ||| || |||| | | |||| || |||||| || ||||| |||||||| ||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
11430502 |
aacgcatatttcatcaatgaacttggtccaggtgttaaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagcag |
11430601 |
T |
|
| Q |
331 |
tacaatttatcactgcatcatatttcctaccagacggactcttctgtgctgctcc |
385 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
11430602 |
tacaatgtattactgcatcatatttcctaccagatggactcttcagtgatgctcc |
11430656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 385
Target Start/End: Complemental strand, 11565164 - 11564810
Alignment:
| Q |
31 |
gctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgag |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||| || |
|
|
| T |
11565164 |
gctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtcttaag |
11565065 |
T |
|
| Q |
131 |
ttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtaccaactgtttcttcgaaaatttaagttttttc |
230 |
Q |
| |
|
||||||||| ||||| | || || |||||||| |||||||| | ||||| |||||||| | | |||||| || ||||| ||||| ||||||| ||| |
|
|
| T |
11565064 |
ttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaataaaaggtacccacaacttctttgaaaaggtaagtttcttc |
11564965 |
T |
|
| Q |
231 |
agctcaaaagtcaacattgaattcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcgg |
330 |
Q |
| |
|
| | || | ||| || |||| | | |||| || |||||| || ||||| |||||||| ||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
11564964 |
aacgcatatttcatcaatgaacttggtccaggtgttaaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagcag |
11564865 |
T |
|
| Q |
331 |
tacaatttatcactgcatcatatttcctaccagacggactcttctgtgctgctcc |
385 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
11564864 |
tacaatgtattactgcatcatatttcctaccagatggactcttcagtgatgctcc |
11564810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University