View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_high_14 (Length: 302)
Name: NF18002_high_14
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 77 - 293
Target Start/End: Complemental strand, 40119868 - 40119652
Alignment:
| Q |
77 |
ttgaattattttttcttatagtctaattaatttcccggtgttgataagtttaattagatattctggatggggactaattgcagtttgccaccatatatct |
176 |
Q |
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| T |
40119868 |
ttgaattattttttcttatagtctcattaatttcccggtgttgataagtttaattagatattctggatggggactaattgcagtttgccaccatatatct |
40119769 |
T |
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| Q |
177 |
cagggagttgactttcatctatgtcttctagaagtgttgattttagcttattgttctccacaaatactatctgcaaaggcaaagagatccaattcaactt |
276 |
Q |
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| T |
40119768 |
cagggagttgactttcatctatgtcttctagaagtgttgattttagcttattgttctccacaaatactatctgcaaaggcaaagagatccaattcaactt |
40119669 |
T |
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| Q |
277 |
catgtgtattttcattt |
293 |
Q |
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||||||||||||||||| |
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| T |
40119668 |
catgtgtattttcattt |
40119652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 40124508 - 40124361
Alignment:
| Q |
104 |
taatttcccggtgttgataagtttaattagatattctggatggggactaattgcagtttgccaccatatatctcagggagttgactttcatctatgtctt |
203 |
Q |
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|||||| || ||| |||| |||||||| || ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
40124508 |
taatttgccagtgctgattagtttaat-agctatcctggatggggactaattgcagtttgccaccgtatatctccgggagttgactttcgtctatatctt |
40124410 |
T |
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| Q |
204 |
ctagaagtgttgattttagcttattgttctccacaaatactatctgcaa |
252 |
Q |
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||| |||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
40124409 |
ctaaaagtgttgatttcagcttgttgttttccacaaatactatctgcaa |
40124361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 44989364 - 44989261
Alignment:
| Q |
149 |
actaattgcagtttgccaccatatatctcagggagttgactttcatctatgtcttctagaagtgttgattttagcttattgttctccacaaatactatct |
248 |
Q |
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|||||| | |||||||| ||||||||||| ||||| ||||| ||||| || ||||| || | ||||| ||| ||||| |||||||| ||||||||||||| |
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| T |
44989364 |
actaatggaagtttgcctccatatatctctgggagctgactctcatcaatctcttcaagcaatgttgctttcagcttcttgttctcaacaaatactatct |
44989265 |
T |
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| Q |
249 |
gcaa |
252 |
Q |
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|||| |
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| T |
44989264 |
gcaa |
44989261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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