View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18002_high_18 (Length: 247)
Name: NF18002_high_18
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 41339320 - 41339541
Alignment:
| Q |
19 |
cttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcattacagatggaaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41339320 |
cttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaa |
41339419 |
T |
|
| Q |
119 |
tgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339420 |
tgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatgg |
41339519 |
T |
|
| Q |
219 |
attataataagtgcctttgctt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41339520 |
attataataagtgcctttgctt |
41339541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 36136465 - 36136541
Alignment:
| Q |
72 |
agggaaaggttttccagccgtggtcgaaatcattacagatggaaaaatgagcaaccaggtatctaaatggttatttc |
148 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36136465 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
36136541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 36136571 - 36136653
Alignment:
| Q |
146 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa |
228 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||| |||||||| ||| ||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
36136571 |
ttcagttatatttgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataa |
36136653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 22629970 - 22630048
Alignment:
| Q |
146 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattata |
224 |
Q |
| |
|
|||| ||||||||||||| |||| |||| || || ||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22629970 |
ttcagttagatttgtaactaactttttcacttaaatttttcataaggatatcattataaatatataactattgattata |
22630048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 22629820 - 22629905
Alignment:
| Q |
25 |
gacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcattacaga |
110 |
Q |
| |
|
|||||||| |||| |||||| | || || |||||||| ||||||| | | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22629820 |
gacccggttagtttcacaggaaaccgaaaaatttgaactctaatttgaagtaaaggttttccagccttggtcgaaatcattacaga |
22629905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University