View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_high_4 (Length: 513)
Name: NF18002_high_4
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 94 - 505
Target Start/End: Complemental strand, 21752330 - 21751913
Alignment:
| Q |
94 |
agttaataaccttgtttgtgttaataagcttggaatgttaaaccagcagaggttgagactaatcatctgtaacacagtcttaaatggaagtacagagtga |
193 |
Q |
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| T |
21752330 |
agttaataaccttgtttgtgttaataagcttggaatgttaaaccagcagaggctgagactaatcatctgtaacacagtcttaaatggaagtacagagtga |
21752231 |
T |
|
| Q |
194 |
gtgatggggggtggtagttggtgtttgattaatgctagtttaaatctggacatagttaagctggtccaagttaatgattttaagaggcaggtcctctttt |
293 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21752230 |
gtgatggggg-tggtagttggtgtttgattaatgctagtttaaatctggacatagttaagctggtccaagttaatgattttaagaggcaggtcctctttt |
21752132 |
T |
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| Q |
294 |
ctagaaaaataacaatcagaaactgcaactatatgtaataattgagtccacaaatacccaaaaccgtataactgcttgttcttattcatttattgctctg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21752131 |
ctagaaaaataacaatcagaaactgcaactatatgtaataattgagtccacaaatacccaaaaccgtataactgcttgttcttattcatttattgctctg |
21752032 |
T |
|
| Q |
394 |
gaaaacttgttttactactgtgtact-------gtgttatattgttacctaacttgtctttgtgcttgatattcaaatgcatgaggcatattaccaatat |
486 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21752031 |
gaaaacttgttttactactgtgtactgtgtactgtgttatattgttacctaacttgtctttgtgcttgatattcaaatgcatgaggcatattaccaatat |
21751932 |
T |
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| Q |
487 |
tagaactaattttcatctc |
505 |
Q |
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|||||||||||| |||||| |
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| T |
21751931 |
tagaactaatttccatctc |
21751913 |
T |
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