View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18002_high_6 (Length: 486)

Name: NF18002_high_6
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18002_high_6
NF18002_high_6
[»] chr4 (15 HSPs)
chr4 (239-468)||(8042038-8042267)
chr4 (18-171)||(8036388-8036541)
chr4 (239-406)||(8036609-8036776)
chr4 (18-171)||(8416287-8416440)
chr4 (18-152)||(8041805-8041939)
chr4 (244-468)||(9139681-9139890)
chr4 (323-469)||(8410363-8410509)
chr4 (18-128)||(9138992-9139102)
chr4 (18-152)||(8410653-8410787)
chr4 (243-400)||(8416069-8416211)
chr4 (18-128)||(8356506-8356616)
chr4 (18-128)||(8403626-8403736)
chr4 (18-128)||(43144865-43144975)
chr4 (18-128)||(8359552-8359662)
chr4 (305-373)||(8359968-8360036)
[»] chr7 (1 HSPs)
chr7 (18-128)||(5476165-5476275)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 239 - 468
Target Start/End: Original strand, 8042038 - 8042267
Alignment:
Q  239 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8042038 caactttttccaataaattattgtcactgttattataatcttaaaaataaacaatcttaccttatggtttttgatttgttggggtgtgattggcggaacc 8042137  T
Q  339 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattaccta 438  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  8042138 caattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacggaaacttccattcccta 8042237  T
Q  439 aatcttcgctaacgcagccttcccaccacc 468  Q
    |||||||  |||||| ||||||||||||||    
T  8042238 aatcttcaataacgcggccttcccaccacc 8042267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 8036388 - 8036541
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036388 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 8036487  T
Q  118 taatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 171  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8036488 taatcctattttcctgccgctgtcgcttcagttcctggttggataaacaacttg 8036541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 239 - 406
Target Start/End: Original strand, 8036609 - 8036776
Alignment:
Q  239 caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8036609 caactttttccaataaattattgtcactgttattataatcttaaaaataaactatcttaccttatggtttttgatttgttggggtgtgactggcggaacc 8036708  T
Q  339 caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 406  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8036709 caattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttccaagtc 8036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 8416440 - 8416287
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||| |||||||||||||||||    
T  8416440 caaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactcaatatatggagcaataagcagtcaggcaactcac 8416341  T
Q  118 taatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg 171  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  8416340 taatcctattttcccgccgctgtcgcttcagttcctggttggataaacaacttg 8416287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8041805 - 8041939
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || | ||||||||||||||||||||||||| ||||    
T  8041805 caaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaacccaatgtgtggagcaatatgcagtcaggcaaatcac 8041904  T
Q  118 taatcctattttcctgccgctgtcgcttcagttcc 152  Q
    ||||||||| |||||||||||||||||||||||||    
T  8041905 taatcctatcttcctgccgctgtcgcttcagttcc 8041939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 468
Target Start/End: Original strand, 9139681 - 9139890
Alignment:
Q  244 ttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaatt 343  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||  | |||||||||||||||               |||||||| |||||||||||    
T  9139681 ttttccaacaaattattgctactgttattataatcttaaaaataaactaccttaccttatggttt---------------gtgattgggggaacccaatt 9139765  T
Q  344 gtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattacctaaatct 443  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || |||||||| |||||||||    
T  9139766 gtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgtaaaacacacaagaaatcttccattccctaaatct 9139865  T
Q  444 tcgctaacgcagccttcccaccacc 468  Q
     ||||||||| ||||||||||||||    
T  9139866 gcgctaacgcggccttcccaccacc 9139890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 323 - 469
Target Start/End: Complemental strand, 8410509 - 8410363
Alignment:
Q  323 tgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacgg 422  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| |  ||||||||||||| |||||     
T  8410509 tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacga 8410410  T
Q  423 aaacttccattacctaaatcttcgctaacgcagccttcccaccacct 469  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||    
T  8410409 aaacttccattccctaaatcttcgctaacacggccttcccaccacct 8410363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 9138992 - 9139102
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  9138992 caaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactcaatatgtggagcaatatgcagtcaggcaactcac 9139091  T
Q  118 taatcctattt 128  Q
     ||||||||||    
T  9139092 aaatcctattt 9139102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 8410787 - 8410653
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||| ||| | |||||||| |||||||||||||||||    
T  8410787 caaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcaatatctagagcaataagcagtcaggcaactcac 8410688  T
Q  118 taatcctattttcctgccgctgtcgcttcagttcc 152  Q
    |||||||||||||| ||  ||||  ||||||||||    
T  8410687 taatcctattttcccgcatctgtgtcttcagttcc 8410653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 8416211 - 8416069
Alignment:
Q  243 tttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaat 342  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||               |||||||| ||||||||||    
T  8416211 tttttccaacaaattattgttactgttattataatcttaaaaataaactatcttaccttatggttt---------------gtgattgggggaacccaat 8416127  T
Q  343 tgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttc 400  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8416126 tgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttc 8416069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8356506 - 8356616
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||| |||| |||||||| ||||| |||||| ||||||||||    
T  8356506 caaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtggaccaataagcagtctggcaactcac 8356605  T
Q  118 taatcctattt 128  Q
    |||||||||||    
T  8356606 taatcctattt 8356616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 8403736 - 8403626
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||| |||| ||||||||| | |||||||||||| |||||||    
T  8403736 caaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcac 8403637  T
Q  118 taatcctattt 128  Q
     ||||||||||    
T  8403636 caatcctattt 8403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 43144865 - 43144975
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||| || ||||||||||| |||||  ||||| | ||| ||||||||||||| |||| ||| ||||||| ||||||||| ||||||||||    
T  43144865 caaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattatatggagcagtatgcagtcgggcaactcac 43144964  T
Q  118 taatcctattt 128  Q
    |||||| ||||    
T  43144965 taatccaattt 43144975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8359552 - 8359662
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||| |||||||||||||| |||||  ||||||| ||| | ||||  | ||| |||| ||||||||||| |||||||||||| |||| ||    
T  8359552 caaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcattatgtggagcagtatgcagtcaggtaacttac 8359651  T
Q  118 taatcctattt 128  Q
    | ||| |||||    
T  8359652 tgatcatattt 8359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 8359968 - 8360036
Alignment:
Q  305 gtttttgatttgttggggtgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaag 373  Q
    |||||||| |||||||  ||||||| | ||||||||||||||||| ||||| |  || |||||||||||    
T  8359968 gtttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag 8360036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 5476275 - 5476165
Alignment:
Q  18 caaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtggagcaatatgcagtcaggcaactcac 117  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| |||| ||||||||| | |||||||||||| |||||||    
T  5476275 caaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcac 5476176  T
Q  118 taatcctattt 128  Q
    |||||||||||    
T  5476175 taatcctattt 5476165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University