View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_high_8 (Length: 406)
Name: NF18002_high_8
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 46278741 - 46279119
Alignment:
| Q |
9 |
gagaagaaaaaacaactacagcatgtggaaatatgtcaggtaggatcaggaacactgttatgtaaatggatatgacatcaatagcagcagcattaaattg |
108 |
Q |
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| T |
46278741 |
gagaagaaaaaacaactacagcatgtggaaatatgtcaggtaggatcaggaacactgttatgtaaatggatatgacatcaatagcagcagcattaaattg |
46278840 |
T |
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| Q |
109 |
aacacacctcaattccatttcaaaactaaaatgtaatgatatataactaattactgcatatattcaccagatagggagaaaaatcaatcagttatttttc |
208 |
Q |
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| T |
46278841 |
aacacacctcaactccatttcaaaactaaaatgtaatgatatataactaattactgcatatattcaccagatagggagaaaaatcaatcagttatttttc |
46278940 |
T |
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| Q |
209 |
tttatcatcaattaaaaataccccttacaagagacacatatataaattgtaaacttgtaccaatttcaaggtcagaactcagaacagaaacaaacaagaa |
308 |
Q |
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| T |
46278941 |
tttatcatcaattaaaaataccccttacaagagacacatatataaattgtaaacttgtaccaatttcaaggtcagaactcagaacagaaacaaacaagaa |
46279040 |
T |
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| Q |
309 |
agtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatac |
387 |
Q |
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| T |
46279041 |
agtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatac |
46279119 |
T |
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