View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_1 (Length: 814)
Name: NF18002_low_1
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_1 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 735; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 17 - 801
Target Start/End: Complemental strand, 38638769 - 38637983
Alignment:
| Q |
17 |
accttattccaatatgaactaaagatttttgtaagtgaaataaataacatata--ggaaactaaactaactaccaacctctgaacgtgacatcttatcaa |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638769 |
accttattccaatatgaactaaagttttttgtaagtgaaataaataacatatataggaaactaaactaactaccaacctctgaacgtgacatcttatcaa |
38638670 |
T |
|
| Q |
115 |
gggctgctacatctttttctttagccaactgatgcactttatttattagcgaacaatgctgatcatacgggagaatctgaaatttaaaatttaacacata |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638669 |
gggctgctatatctttttctttagccaactgatgcactttatttattagcgaacaatgctgatcatacgggagaatctgaaatttaaaatttaacacata |
38638570 |
T |
|
| Q |
215 |
agatgtggcaagttctacatgtttggggctccctaattgacgagttattgcatcatgaagatgatagtgaacaaataagtgaaaactagattacttaggc |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38638569 |
agatgtggcaagttctacatgtttggggctccctaattgacgagttattgcatcatgaagatgatagtgaacagataagtgaaaactagattacttaggc |
38638470 |
T |
|
| Q |
315 |
cacaagttatctagttagtcagtttaatttagtaatcatgtgtggttacttacacaataagctagcatagagtctcatttgtatataaatagcaattgta |
414 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638469 |
cacaagttatctagttagtcagtttaatttagtaatcctgtgtggttacttacacaataagctagcatagagtctcatttgtatataaatagcaattgta |
38638370 |
T |
|
| Q |
415 |
cattcaatattcaatcattgaattcactatttcattcaatcataatacgagtacttnnnnnnnctcatcgtctcaaactctaagataacgaataatctaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38638369 |
cattcaatattcaatcattgaattcactatttcattcaatcataatacgagtacttaaaaaaactcatcgtctcaaactctaagataacgaataatctaa |
38638270 |
T |
|
| Q |
515 |
tatcagtcttctgaagtataagttcatgacctttatcgttggaacatctgagacaatgacttgatcgatgtcaatttgtcaaaacaaatgacactagtaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638269 |
tatcagtcttctgaagtataagttcatgacctttatcgttggaacatctgagacaatgacttgatcgatgtcaatttgtcaaaacaaatgacactagtaa |
38638170 |
T |
|
| Q |
615 |
gtgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatccttt |
714 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638169 |
ttgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatccttt |
38638070 |
T |
|
| Q |
715 |
ttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttctagttctttcatatcatgtctacctttg |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638069 |
ttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttctagttctttcatatcatgtctacctttg |
38637983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 656 - 794
Target Start/End: Complemental strand, 38634082 - 38633944
Alignment:
| Q |
656 |
ttacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataa |
755 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||| || ||||||||||||| |
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| T |
38634082 |
ttacctcctcatgatgcaagtttttcaattttaaaatcctttgatatgcttcaccctttttcttatgattctctgttaattttgctttcaaagaatataa |
38633983 |
T |
|
| Q |
756 |
ttctctgtttatagcttctagttctttcatatcatgtct |
794 |
Q |
| |
|
||||| ||||| |||||||||||||||| | ||||||| |
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| T |
38633982 |
ttctccatttatggcttctagttctttcacaccatgtct |
38633944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 38634474 - 38634333
Alignment:
| Q |
56 |
ataaataacatataggaaactaaactaactaccaacctctgaacgtgacatcttatcaagggctgctacatctttttctttagccaactgatgcacttta |
155 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| |||| || |||||||||||||| |||| |||||| |||||| |
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| T |
38634474 |
ataaataacatatagcgaactaaaccaactaccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggacttta |
38634375 |
T |
|
| Q |
156 |
tttattagcgaacaatgctgatcatacgggagaatctgaaat |
197 |
Q |
| |
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||||| || ||||||||||| | ||| |||||||||||||| |
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| T |
38634374 |
tttataagtgaacaatgctggtaatagtggagaatctgaaat |
38634333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 676 - 757
Target Start/End: Complemental strand, 38690730 - 38690649
Alignment:
| Q |
676 |
tttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataatt |
757 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
38690730 |
tttttcaatttgaaaatcctttgatatgcttcatccttattcttatgcttctctatcaattttgcactcaaagaatataatt |
38690649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 38692202 - 38692030
Alignment:
| Q |
64 |
catataggaaactaaactaactaccaacctctgaacgtgacatcttatcaagggctgctacatcttttt-ctttagccaactgatgcactttatttatta |
162 |
Q |
| |
|
|||||| | |||||||| || ||||| ||||||||| |||||||| ||||||| || ||||||||||| ||| | || ||||| ||||||||||||| |
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|
| T |
38692202 |
catatatggaactaaaccaattaccagcctctgaacttgacatctcatcaaggactcttacatcttttttcttcactcagttgatgtactttatttatta |
38692103 |
T |
|
| Q |
163 |
gcgaacaatgctgatcatacgggagaatctgaaatttaaaatttaacacataagatgtggcaagttctacatgtttgg |
240 |
Q |
| |
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| ||||||| || | ||| ||||||||| |||| |||| | ||||||| ||||||||||||||||||||| |
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| T |
38692102 |
gtgaacaatacttgtaataatggagaatctacaattgaaaaagt-----ataagatatggcaagttctacatgtttgg |
38692030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 657 - 760
Target Start/End: Original strand, 45335472 - 45335575
Alignment:
| Q |
657 |
tacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataat |
756 |
Q |
| |
|
||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||| |||||| |||| |||||||||||| |||||| | |
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|
| T |
45335472 |
tacctcctcatgatgcaaatttttcgattttaaaattctttgatatgcttcaccctttttcttatgattctctttcaacttttctctcaaataatatagt |
45335571 |
T |
|
| Q |
757 |
tctc |
760 |
Q |
| |
|
|||| |
|
|
| T |
45335572 |
tctc |
45335575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 259 - 406
Target Start/End: Complemental strand, 29424102 - 29423962
Alignment:
| Q |
259 |
ttattgcatcatgaagatgatagtgaacaaataagtgaaaactagattacttaggccacaagttatctagttagtcagtttaatttagtaatcatgtgtg |
358 |
Q |
| |
|
||||| |||| ||||||||||||| || | || |||||||| ||||||||||||| |||||||||||||||| | |||||| | ||| ||||| |
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|
| T |
29424102 |
ttattacatcttgaagatgatagtaaatagattagtgaaaaacagattacttaggcaacaagttatctagttaattagtttact-----aattatgtga- |
29424009 |
T |
|
| Q |
359 |
gttacttacacaataagctagcatagagtctcatttgtatataaatag |
406 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29424008 |
-ttactcacacaataagatagcatagagtctcatttgtatataaatag |
29423962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 678 - 775
Target Start/End: Complemental strand, 13167 - 13070
Alignment:
| Q |
678 |
tttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttcta |
775 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| |||| ||||| |||||||||||||||| |||||||||| || |||||| ||||||| |
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|
| T |
13167 |
tttcaatttcaaaatcctttgctttgcttcatactttttgttatacttctgattcaatttttctctcaatgaatataattttccgtttatggcttcta |
13070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 13654 - 13568
Alignment:
| Q |
85 |
taccaacctctgaacgtgacatcttatcaagggctgctacatctttttctttagccaactgatgcactttatttattagcgaacaat |
171 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| || |||||||||||||| | || ||||| ||||||||||| || ||||||| |
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|
| T |
13654 |
taccaacctctgaacttgacatctcatcaaggagtgttacatctttttcttcactcagttgatgtactttatttataagtgaacaat |
13568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 42621600 - 42621547
Alignment:
| Q |
353 |
tgtgtggttacttacacaataagctagcatagagtctcatttgtatataaatag |
406 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42621600 |
tgtgtgattacttgcacaataagctagcatagagcttcatttgtatataaatag |
42621547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 10434149 - 10434107
Alignment:
| Q |
565 |
agacaatgacttgatcgatgtcaatttgtcaaaacaaatgaca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
10434149 |
agacaatgacttgatcgatgtcaatttgacaaaagcaatgaca |
10434107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 40766881 - 40766959
Alignment:
| Q |
57 |
taaataacatataggaaactaaactaactaccaacctctgaacgtgacatcttatcaagggctgctacatctttttctt |
135 |
Q |
| |
|
||||||||||||||| | ||||| ||| || |||||||||| || |||| |||||||| ||||||||||||||||| |
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|
| T |
40766881 |
taaataacatatagggacttaaaccaacaacagacctctgaacaagaaatctcatcaagggatgctacatctttttctt |
40766959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 452
Target Start/End: Original strand, 45639551 - 45639648
Alignment:
| Q |
355 |
tgtggttacttacacaataagctagcatagagtctcatttgtatataaatagcaattgtacattcaatattcaatcattgaattcactat-ttcattca |
452 |
Q |
| |
|
|||| |||||| |||||||||||| ||| ||| ||||||||||||||||||| ||||||| ||| || ||||| | || ||||||||| |||||||| |
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|
| T |
45639551 |
tgtgattacttgcacaataagctaccattgagctacatttgtatataaatagcacttgtacagtcatta-tcaattaatggattcactatattcattca |
45639648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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