View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_12 (Length: 370)
Name: NF18002_low_12
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 7024256 - 7023919
Alignment:
| Q |
16 |
attctatgtacatatggtctagtctatattgtcatgggatattatccatgttataagttggatctatatatactaataataatgataaagcattcatata |
115 |
Q |
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| T |
7024256 |
attctatgtacatatggtctagtctatattgtcatgggatattatccatgttataagttggatctatatatactaataataatgataaagcattcatata |
7024157 |
T |
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| Q |
116 |
tttttctttatactgatcaagatgtttgcgtggcaggtgagaaaaaacttgcattgctagagaaggagctcctggaagagcacgtatgcctacaattctt |
215 |
Q |
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| T |
7024156 |
tttttctttatactgatcaagatgtttgcgtggcaggtgagaaaaaacttgcattgctagagaaggagctcctagaagagcacgtatgcctacaattctt |
7024057 |
T |
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| Q |
216 |
tcccttannnnnnnnnaacgttaacaaaacagggttaacacttacagtcattttttgattccttaattgatcaagtgtttctgagttacgagatatggat |
315 |
Q |
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| T |
7024056 |
tcccttatttttttttaacgttaacaaaacagggttaacacttacagtcattttttgattccttaattgatcaagtgtttctgagttacgagatatggat |
7023957 |
T |
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| Q |
316 |
atggtgacagtggttttctgaattttttagctccttta |
353 |
Q |
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| T |
7023956 |
atggtgacagtggttttctgaattttttagctccttta |
7023919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 11126560 - 11126450
Alignment:
| Q |
54 |
atattatccatgttataagttggatctatatatactaataataatgataaagcattcatatatttttctttatactgatcaagatgtttgcgtggcaggt |
153 |
Q |
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| T |
11126560 |
atattatccatgttatgaggtggatctctgtttacttataataactataaagcctttatatatttttatttatactgatcaagatgtttgtgtggcaggt |
11126461 |
T |
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| Q |
154 |
gagaaaaaact |
164 |
Q |
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| T |
11126460 |
cagaaaaaact |
11126450 |
T |
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