View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18002_low_13 (Length: 368)

Name: NF18002_low_13
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18002_low_13
NF18002_low_13
[»] chr2 (2 HSPs)
chr2 (139-303)||(33662450-33662613)
chr2 (135-229)||(33662378-33662468)
[»] chr7 (2 HSPs)
chr7 (12-80)||(8179227-8179295)
chr7 (205-350)||(8179563-8179689)
[»] chr1 (4 HSPs)
chr1 (135-240)||(20014302-20014403)
chr1 (163-303)||(20014605-20014746)
chr1 (174-231)||(20014268-20014326)
chr1 (139-179)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (90-140)||(47444469-47444519)
chr3 (135-231)||(6524724-6524816)
chr3 (171-215)||(44364931-44364975)
chr3 (174-214)||(6524651-6524691)
chr3 (177-231)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (83-122)||(36130417-36130456)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 33662450 - 33662613
Alignment:
Q  139 aattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatat 238  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||  ||    
T  33662450 aattggaaaattaagatttcacttatatgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattgaaaacttagaatttgactc--at 33662547  T
Q  239 gttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagat-agatggtttgtattcgtc 303  Q
    || | | ||||||||||||| ||| || || |||||||||  ||||| ||||||||||||||||||    
T  33662548 gtagccctgtatcatgcagtcgttaatctcagtcgtttgattgagatcagatggtttgtattcgtc 33662613  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 33662378 - 33662468
Alignment:
Q  135 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggattt 229  Q
    ||||| ||||||||| |||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  33662378 tttaatttggaaaataaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagattt 33662468  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 8179227 - 8179295
Alignment:
Q  12 tattctgattgtttgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179227 tattctgattgtttgcaaacaagtgtgtgaaataggagctagcaaccccacataactcttgctgacccg 8179295  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 350
Target Start/End: Original strand, 8179563 - 8179689
Alignment:
Q  205 ttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagatagatggtttgtattcgtct 304  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||                  ||||||||||||||    
T  8179563 ttgtttaattagaaacttaggatttgaatcatatgcagtcatgtatcatgcagttgttgatctcggtc------------------gtttgtattcgtct 8179644  T
Q  305 gcaagtactggaacaagcgacaactgtgagcaaacttggtctacaa 350  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  8179645 gcaagtgct-gaacaagcgacaactgtgagcaaacttggtctacaa 8179689  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 20014302 - 20014403
Alignment:
Q  135 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatc 234  Q
    ||||| |||||||||||||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| ||    
T  20014302 tttaatttggaaaattaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagagttgactc 20014397  T
Q  235 atatgt 240  Q
    ||||||    
T  20014398 atatgt 20014403  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 20014605 - 20014746
Alignment:
Q  163 atatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgtt 262  Q
    ||||||| |||||||||||||||||||| |||||  |||||||||| |||||  ||||||||||||||| |||  ||| | ||||||||||||| | |||    
T  20014605 atatgtagtgcatttaatttaatttaatcaattgcttcgtttttgtttaattaaaaacttaggatttgactcaagtgtagccatgtatcatgcaatcgtt 20014704  T
Q  263 gatatcggtcgtttgaaggagat-agatggtttgtattcgtc 303  Q
     || ||| |||||||| ||||||  ||||| |||||||||||    
T  20014705 aatctcgatcgtttgatggagatctgatggattgtattcgtc 20014746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 20014268 - 20014326
Alignment:
Q  174 atttaatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 231  Q
    ||||||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||||    
T  20014268 atttaatttaatttaatcaattgtgatgtttttgtttaatttggaaaattaggatttga 20014326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 20014374 - 20014414
Alignment:
Q  139 aattggaaaattaggatttgactcatatgtaatgcatttaa 179  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  20014374 aattggaaaattaagagttgactcatatgtagtgcatttaa 20014414  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 47444469 - 47444519
Alignment:
Q  90 aatttcaaattaacattagttagcaaagcaaaagtagtcaacgtctttaaa 140  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  47444469 aatttcaaatcaacattagttagcaaagcaaaagtggtcaacgtctttaaa 47444519  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 6524816 - 6524724
Alignment:
Q  135 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttga 231  Q
    ||||| |||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||||||||||  |||||| || ||| |||||||    
T  6524816 tttaatttggaaaattaggatttgact----tttagtgcatttaatttaacttaatcaattgtgtcgtttttgttcaattggtaaattaagatttga 6524724  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 44364931 - 44364975
Alignment:
Q  171 tgcatttaatttaatttaataaattgtgtcgtttttgtgtaattg 215  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44364931 tgcatttaatttaatttaatcaattgtgtcgtttttgtttaattg 44364975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 6524691 - 6524651
Alignment:
Q  174 atttaatttaatttaataaattgtgtcgtttttgtgtaatt 214  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6524691 atttaatttaatttaatcaattgtgtcgtttttgtttaatt 6524651  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 6524847 - 6524792
Alignment:
Q  177 taatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 231  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||||    
T  6524847 taatttaatttaatcaattgtgttgtttttgtttaatttggaaaattaggatttga 6524792  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 36130417 - 36130456
Alignment:
Q  83 attgatgaatttcaaattaacattagttagcaaagcaaaa 122  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36130417 attgatgaatttcaaattaacattaattagcaaagcaaaa 36130456  T

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