View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_15 (Length: 287)
Name: NF18002_low_15
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 38765907 - 38766171
Alignment:
| Q |
16 |
caagtggaactagtggagatcctaaaggcgttgttttaacacatgaaaacgtactagctttagtaagaggaatggatcttttcatggaacaatttgagga |
115 |
Q |
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| T |
38765907 |
caagtggaactagtggagatcctaaaggcgttgttttaacacatgaaaacgtactagctttagtaagaggaatggatcttttcatggaacaatttgagga |
38766006 |
T |
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| Q |
116 |
caaggtggtatccttaatcttctttaattaattcataagctgaaattaattatatgtaatgtaacacatattttacttcgtgtagatgactgtggatgat |
215 |
Q |
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| T |
38766007 |
caaggtggtatccttaatcttctttaattaattcataagctgaaattaattatatgtaatgtaacacatattttacttcgtgtagatgactgtggatgat |
38766106 |
T |
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| Q |
216 |
gtgtatttatccttcctccctttagctcacatccttgatcgttgtattgaagaatattttcttcg |
280 |
Q |
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| T |
38766107 |
gtgtatttatccttcctccctttagctcacatccttgatcgttgtattgaagaatatttttttcg |
38766171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 44997569 - 44997511
Alignment:
| Q |
198 |
tagatgactgtggatgatgtgtatttatccttcctccctttagctcacatccttgatcg |
256 |
Q |
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| T |
44997569 |
tagatgactgttgaagatgtgtatttatctttccttcctttggctcatatccttgatcg |
44997511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 44997844 - 44997739
Alignment:
| Q |
16 |
caagtggaactagtggagatcctaaaggcgttgttttaacacatgaaaacgt-actagctttagtaagaggaatggatcttttcatggaacaatttgagg |
114 |
Q |
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| T |
44997844 |
caagtggaacaagtggagaccctcagggtgttgttttgactcatgaaaacattacttatttt-gtaaggggaatggatattttcatggaacaatttgaag |
44997746 |
T |
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| Q |
115 |
acaaggt |
121 |
Q |
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||||||| |
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| T |
44997745 |
acaaggt |
44997739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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