View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_17 (Length: 264)
Name: NF18002_low_17
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 40263538 - 40263304
Alignment:
| Q |
12 |
atgaattaggcgatatctctatactggcaagcttaacaagactcgagattctcgatctacgtagttcaactttcgatgaactgccacaaggaatcgcaac |
111 |
Q |
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| T |
40263538 |
atgaattaggcgatatctctatactggcaagcttaacaagactcgagattctcgatctacgtagttcaactttcgatgaactgccacaaggaatcgcaac |
40263439 |
T |
|
| Q |
112 |
tttgaagaaactaagactactggatatatacacttgtcgcatcaagaaaagcaacccttatgaagtgataatgaagtgtacacagctagaggaattgtat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40263438 |
tttgaagaaactaagactactggatatatacacttgtcgcatcaagaagagcaacccttatgaagtgataatgaagtgtacacagctagaggaattgtat |
40263339 |
T |
|
| Q |
212 |
atgtggagagttgaagatgattctttacatattag |
246 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40263338 |
atgtggagagttgaagatgattctttacatattag |
40263304 |
T |
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