View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_19 (Length: 258)
Name: NF18002_low_19
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 28094207 - 28093987
Alignment:
| Q |
38 |
tgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttacta |
137 |
Q |
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| T |
28094207 |
tgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttacta |
28094108 |
T |
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| Q |
138 |
gaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094107 |
gaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagac |
28094008 |
T |
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| Q |
238 |
atctatcaaaatcctctttat |
258 |
Q |
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||||||||||||||||||||| |
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| T |
28094007 |
atctatcaaaatcctctttat |
28093987 |
T |
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