View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_2 (Length: 640)
Name: NF18002_low_2
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 38002666 - 38003106
Alignment:
| Q |
7 |
tccaagaatatggttcatctta----ctatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcac |
102 |
Q |
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| T |
38002666 |
tccaataatatggttcatcttacttactatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcac |
38002765 |
T |
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| Q |
103 |
cctcccccctccttcaaactataaattaaatgttgatgactctcgtaatatcatcattcgcttagctcctcgttctacggtggcttcatctgagattcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
38002766 |
cctcccccctccttcaaactataaattaaatgttgatgactctcgtaatatcatcattcgcttagctcctcgttctgcagtgacttcatctgagattcat |
38002865 |
T |
|
| Q |
203 |
ttgacagcttcatcaaatgattccattgtaatatattggaaccttcattgctatttttactgagctttttgggtct----ttaattcggtattaagcttg |
298 |
Q |
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| T |
38002866 |
ttgacagcttcatcaaaggattccattgtaatatattggaaccttcattgctatttttactgagcttttggggtctttaattaattcggtattaagcttg |
38002965 |
T |
|
| Q |
299 |
catgtgatcaatgtattacttctcttatcgtgaattatgattcttagctcatgttattatttagattgtttgtggcacttcaacccacactacgactctt |
398 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
38002966 |
catgtgatcaatgtattacttctcttatcgtggattatgatt-----ctcatgttattatttagattgtttgtggcgcttcaaccaacactatgactctt |
38003060 |
T |
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| Q |
399 |
gagcctttcttactcgacatttcttggcttatccattttactgatt |
444 |
Q |
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| T |
38003061 |
gagcctttcttactcgacatttcttggtttatacattttactgatt |
38003106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 551 - 626
Target Start/End: Original strand, 38003141 - 38003216
Alignment:
| Q |
551 |
tagctcttaagcttcaatttgatataatagggtatggtatccttatattagctccttagtcttttgtagtatactt |
626 |
Q |
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| T |
38003141 |
tagctcttaagcttcaatttgatataatggggtatggtatccttatattacctccttagtcttttgtagtatactt |
38003216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 36276057 - 36275938
Alignment:
| Q |
15 |
tatggttcatcttactatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcaccctcccccctcc |
114 |
Q |
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|||||| ||||||| ||| ||||||||| || |||||| | |||| || || |||||||||||| | ||||||||| |||||||||| ||||||| |
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| T |
36276057 |
tatggtccatcttattatgcaagacacaattcacagtatttctatatactctactaacatcaaaattgagtttcatattgtttggcaccct-gcccctcc |
36275959 |
T |
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| Q |
115 |
ttcaaactataaattaaatgt |
135 |
Q |
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||| ||||||||||||||| |
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| T |
36275958 |
ttctttctataaattaaatgt |
36275938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 30970158 - 30970107
Alignment:
| Q |
450 |
gtctcgttgaaacatatttataaggaggctaactcttgcgttgatttccttgc |
502 |
Q |
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| T |
30970158 |
gtctcattgaagcatatttatagggag-ctaactcttgcgttgattttcttgc |
30970107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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