View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18002_low_3 (Length: 531)
Name: NF18002_low_3
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_3 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
| [»] scaffold1779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 18343538 - 18343127
Alignment:
| Q |
14 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343538 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcag |
18343439 |
T |
|
| Q |
114 |
ggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18343438 |
ggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacctgttacagtaagacctaccgaaacgcgtat |
18343339 |
T |
|
| Q |
214 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18343338 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaag |
18343239 |
T |
|
| Q |
314 |
gctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18343238 |
gctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaa-aaaatggt |
18343140 |
T |
|
| Q |
414 |
aattgttggtttc |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18343139 |
aattgttggtttc |
18343127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
| Q |
313 |
ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22101625 |
ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca |
22101579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 18343092 - 18343037
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18343092 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacct |
18343037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 163831 - 164233
Alignment:
| Q |
14 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
163831 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaatatgttctttaggcacttgagcccgcttggatcacatctagacaaatagaagtag |
163930 |
T |
|
| Q |
114 |
ggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtat |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
163931 |
ggcgatgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtatgcatatttccagacaaacctgttacattaagatctaccgaaacgcgtat |
164030 |
T |
|
| Q |
214 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
164031 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatagctagaaag |
164130 |
T |
|
| Q |
314 |
gctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
164131 |
gctatttcaatagcggcatccaaaatgcctataagaactcaattcattctttcagaataatcattagatcgaaataggtctttagtat-aaaaaaatgat |
164229 |
T |
|
| Q |
414 |
aatt |
417 |
Q |
| |
|
|||| |
|
|
| T |
164230 |
aatt |
164233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 58 - 362
Target Start/End: Complemental strand, 278213 - 277909
Alignment:
| Q |
58 |
atatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaata |
157 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| | ||||| ||||||||||| ||| | ||||| ||||| ||| || || ||||| |||||| |
|
|
| T |
278213 |
atatgctcttcaagcacttgaacccgcttggatcacggcgagacagatagaagcaggacgaagagcaataacacgatatgcacgtcgtggtggaaaaata |
278114 |
T |
|
| Q |
158 |
tgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgtta |
257 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||| ||||||| || ||||| |||||||| |||||||| || || ||||||||||||||||| || |||| |
|
|
| T |
278113 |
tgggtacgtatatttcccgacaaaccggttacactaagacccacggaaacacgtatgggctcgggaaaggggtcccccgaatattgggtagccgttgtta |
278014 |
T |
|
| Q |
258 |
aacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaatt |
357 |
Q |
| |
|
|||| || ||||||||||||||||| || || | |||| | |||||||| ||||| || |||||||| |||||||| ||||||| |||||| |
|
|
| T |
278013 |
aaccaggtcgtatactttatgaaatggggggagtatctgaaactgtagctagagcagctatctccatagcggccagtaaaatgcccatacgaagtcaatt |
277914 |
T |
|
| Q |
358 |
cattc |
362 |
Q |
| |
|
|||| |
|
|
| T |
277913 |
tattc |
277909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 164272 - 164327
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
164272 |
acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacct |
164327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 6928 - 7202
Alignment:
| Q |
14 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6928 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaa |
7027 |
T |
|
| Q |
114 |
ggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtat |
213 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
7028 |
ggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatatgggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtat |
7127 |
T |
|
| Q |
214 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
288 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7128 |
gggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
7202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 35195013 - 35195287
Alignment:
| Q |
14 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195013 |
atgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaa |
35195112 |
T |
|
| Q |
114 |
ggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtat |
213 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
35195113 |
ggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatatgggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtat |
35195212 |
T |
|
| Q |
214 |
gggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
288 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195213 |
gggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
35195287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 11543019 - 11542964
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11543019 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacct |
11542964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 185 - 426
Target Start/End: Complemental strand, 36841142 - 36840901
Alignment:
| Q |
185 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841142 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
36841043 |
T |
|
| Q |
285 |
gaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
384 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841042 |
gaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
36840943 |
T |
|
| Q |
385 |
aaataggtctttagtatgaaaaaaatggtaattgttggtttc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840942 |
aaataggtctttagtatgaaaaaaatggtaattgttggtttc |
36840901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 36840865 - 36840810
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36840865 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacct |
36840810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 185 - 524
Alignment:
| Q |
29 |
tatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgt |
128 |
Q |
| |
|
|||||||||||| |||| ||||| | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||| |
|
|
| T |
185 |
tatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggattacatctagacaaatagaagcggggcgccgcgcaatga |
284 |
T |
|
| Q |
129 |
cacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaagg |
228 |
Q |
| |
|
|||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
285 |
cacgaaatgtacgccgtggtggaaaactatgggtacgtatatttccagacaaaccagttacggtaagacctacagaaacacgtatgggttcggggaaagg |
384 |
T |
|
| Q |
229 |
atctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcg |
328 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| | || || | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
385 |
atctcccgagtattgggtagctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcg |
484 |
T |
|
| Q |
329 |
gcatccaaaatgcctatacgaactcaattcattctttcag |
368 |
Q |
| |
|
|| || |||||||||||| ||| ||||||||| |||||| |
|
|
| T |
485 |
gcgtcaaaaatgcctataaaaacgcaattcattatttcag |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 197 - 419
Target Start/End: Original strand, 18374946 - 18375165
Alignment:
| Q |
197 |
cctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccag |
296 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| | || ||||| ||| ||| |||||||| | | ||||||||||||||||||| || ||||| |
|
|
| T |
18374946 |
cctaccgaaacgagtatgggttcgagaaaagaatcttctga-tattgaatagttgttgttaaacctgactaaatactttatgaaatgggggg--tcccaa |
18375042 |
T |
|
| Q |
297 |
aaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtcttt |
396 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
18375043 |
aaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactcaatttattctttgagaataactattagaacgaaatagatcttt |
18375142 |
T |
|
| Q |
397 |
agtatgaaaaaaatggtaattgt |
419 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
18375143 |
aatatgaaaaaaatggtaattgt |
18375165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 46699342 - 46699287
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46699342 |
acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacct |
46699287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 10258309 - 10258437
Alignment:
| Q |
156 |
tatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgt |
255 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
10258309 |
tatgggtatgcataattccagacaaacttgttagagtaagacctactgaaacgtgtatgggtttgggaaacggatctcccgaatattgggtagctgtcat |
10258408 |
T |
|
| Q |
256 |
taaacccggcaaaatactttatgaaatgg |
284 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |
|
|
| T |
10258409 |
taaatccggtaaaatactttatgaaatgg |
10258437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 265 - 417
Target Start/End: Complemental strand, 46634463 - 46634306
Alignment:
| Q |
265 |
caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc |
358 |
Q |
| |
|
||||||| |||||||||||||||| | ||| |||| |||||||||||| |||||||||||||| || |||||| |||||||||| ||| ||| | |
|
|
| T |
46634463 |
caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c |
46634365 |
T |
|
| Q |
359 |
attctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt |
417 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
46634364 |
attctttcagaagaataattagaaccaaatatgtctttagtataaaaaaaatggtaatt |
46634306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 46634273 - 46634220
Alignment:
| Q |
462 |
ttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
46634273 |
ttcaactttttgattgaaagatagaaaaaaatgatatgattcaacctcaaacct |
46634220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
| Q |
74 |
cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
150 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||| |
|
|
| T |
5478497 |
cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg |
5478421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 14249454 - 14249399
Alignment:
| Q |
460 |
acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacct |
515 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14249454 |
acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacct |
14249399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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