View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18002_low_5 (Length: 492)

Name: NF18002_low_5
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18002_low_5
NF18002_low_5
[»] chr8 (2 HSPs)
chr8 (1-489)||(34379532-34380020)
chr8 (12-40)||(34380045-34380073)
[»] chr7 (1 HSPs)
chr7 (238-326)||(44419956-44420044)
[»] chr4 (2 HSPs)
chr4 (257-329)||(8814955-8815026)
chr4 (235-286)||(621250-621301)
[»] chr5 (2 HSPs)
chr5 (235-305)||(4032233-4032303)
chr5 (235-298)||(9082516-9082579)
[»] chr3 (1 HSPs)
chr3 (235-286)||(1576855-1576906)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 34380020 - 34379532
Alignment:
Q  1 agttgcatattaagtacataaaaataaaataaacaaattagtaagaaatgagtacacacatgacataatgttgcatatagtctattaggattatacctgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||||||||    
T  34380020 agttgcatattaagtacataaaaataaaataaacaaattagtaagaaatgagtacatgcataacataatgttgcatatagtctataaggattatacctgc 34379921  T
Q  101 taaaacagcatttaaggccaatgatttccaaacagaatcaataatagcttttgacaaagaaccgcattcaagcttctgttttcgaatagattcttccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379920 taaaacagcatttaaggccaatgatttccaaacagaatcaacaatagcttttgacaaagaaccgcattcaagcttctgttttcgaatagattcttccaac 34379821  T
Q  201 atagaagaagcactagcagcagtttcagagggaggaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379820 atagaagaagcactagcagcagtttcagagggaggaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaacc 34379721  T
Q  301 acctaaatgtaagtttgctccacacaccagcttttgcaaaagcctcttcatcttcaaaagtagaagattcaaactctttctgaagtaacctttcttctat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379720 acctaaatgtaagtttgctccacacaccagcttttgcaaaagcctcttcatcttcaaaagtagaagattcaaactctttctgaagtaacctttcttctat 34379621  T
Q  401 ttcactttgttcccttacacacacattaggaaatgcattgaaacacatcactaacaacataggcaaacaaactgtttcaacagtattct 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34379620 ttcactttgttcccttacacacacattaggaaatgcattgaaacacatcactaacaacataggcaaagaaactgtttcaacagtattct 34379532  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 34380073 - 34380045
Alignment:
Q  12 aagtacataaaaataaaataaacaaatta 40  Q
    |||||||||||||||||||||||||||||    
T  34380073 aagtacataaaaataaaataaacaaatta 34380045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 44419956 - 44420044
Alignment:
Q  238 cagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccacctaaatgtaagtttgctccacaca 326  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  44419956 cagaaggaacattgatatgttcaagcttctgaatccaacccatttcaaaaataggattcaaccacctaaatgtaagtttactccacaca 44420044  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 8815026 - 8814955
Alignment:
Q  257 ttcaagcttctgaatccgacccatttcaaatataggattcaaccacctaaatgtaagtttgctccacacacca 329  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  8815026 ttcaagcttctgaatccaacccatttcaaaaatag-attcaaccacctaaatgtaagtttactccacacacca 8814955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 621301 - 621250
Alignment:
Q  235 gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaa 286  Q
    |||||||||||||||| | |||||||| ||||| ||||| ||||||||||||    
T  621301 gaacagaaggaacattgatatgttcaaacttctcaatccaacccatttcaaa 621250  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 4032233 - 4032303
Alignment:
Q  235 gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaaccaccta 305  Q
    ||||||||||| |||| | |||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  4032233 gaacagaaggagcattgatatgttcaagcttctgaatccaacccgtttcaaaaataggattcaaccaccta 4032303  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 9082516 - 9082579
Alignment:
Q  235 gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaatataggattcaa 298  Q
    |||||||||||||||| | ||||||||| |||||||||| |||||||||||| |||||||||||    
T  9082516 gaacagaaggaacattcatatgttcaagattctgaatccaacccatttcaaaaataggattcaa 9082579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 1576855 - 1576906
Alignment:
Q  235 gaacagaaggaacattaacatgttcaagcttctgaatccgacccatttcaaa 286  Q
    |||||||||||||||| | |||||||| ||||| ||||| ||||||||||||    
T  1576855 gaacagaaggaacattgatatgttcaaacttctcaatccaacccatttcaaa 1576906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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