View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18002_low_7 (Length: 429)
Name: NF18002_low_7
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 11667839 - 11667441
Alignment:
| Q |
18 |
aaatactacacgaaacacacacataaatggaagatcatgggtttgaatccaagacatcacaaatattgtatattcaattgaaaaactatacactttgtca |
117 |
Q |
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| T |
11667839 |
aaatactacacgaaacacacgcataaatggaagatcatgggtttgaatccaagacatcacaaatattgtatattcaattgaaaaactatacactttgtca |
11667740 |
T |
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| Q |
118 |
catgaaattttatgttatttatcatttgccttattcataaactcacaaaccctaattttattgtttgtattgatgggcctaatttcacttcactaccatc |
217 |
Q |
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| T |
11667739 |
catgaaattttatgttatttatcatttgccttattcataaattcacaaaccctaattttactgtttgtattgatgggcctaatttcacttcactaccatc |
11667640 |
T |
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| Q |
218 |
tcccatgtctcacaaattattctaacagaacgcattgtacatcctgcttactttcttgatttattgctaacacaaaagaaaagaaagagaacaagaaata |
317 |
Q |
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| T |
11667639 |
tcccatgtctcacaaattattctaacagaacacattgtaaatcctgcttactttcttgatttattgctaacacaaaagaaaagagagagaacaagaaata |
11667540 |
T |
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| Q |
318 |
gttatggcttaagaaaatattggtagcatcaatgcaaatttccagactgagaatgagaccaatattcttgtacaagcttcctaaacatcgattcttctc |
416 |
Q |
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| T |
11667539 |
gttatggcataagaaaatattggtagcatcaatgcaaatttccagactgagaatgagaccaatattcttttacaagcttcctaaacatcgattcttctc |
11667441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 11627906 - 11627962
Alignment:
| Q |
360 |
cagactgagaatgagaccaatattcttgtacaagcttcctaaacatcgattcttctc |
416 |
Q |
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| T |
11627906 |
cagactgaaaatgagaccagtattccttgacaagcttcctgaacaacgattcttctc |
11627962 |
T |
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