View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18002_low_9 (Length: 398)
Name: NF18002_low_9
Description: NF18002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18002_low_9 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 30048580 - 30048951
Alignment:
| Q |
18 |
aagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagcca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048580 |
aagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggaccggtaaacggaagcaagtaaagaatgaagaggaacaagcca |
30048679 |
T |
|
| Q |
118 |
tactttcacaagaagatttagattatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30048680 |
aactttcacaagaagatttagattatgatgcagtcttgttaatggtgaaaacaaccaataatgaaagtcgtaagtcagatagatggtttttagataatgg |
30048779 |
T |
|
| Q |
218 |
ttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttgga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048780 |
ttgttctaatcatatgactgcaaataagaattggttgaaagaaatcaacacgggaagaaacagcaaggtgaagcttgcatatcatagaacactagttgga |
30048879 |
T |
|
| Q |
318 |
aaaggtatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatatt |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048880 |
aaaggcatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatatt |
30048951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 15065706 - 15065483
Alignment:
| Q |
30 |
tgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaag |
129 |
Q |
| |
|
|||| ||| |||||||| |||| ||| | |||||| ||||||||| |||||||| | ||||||| ||||||||| ||||||||||| | || | |||| |
|
|
| T |
15065706 |
tgttttaaatgtgaaaattttgatcactttgcttccgaatgttggtctggtaaaggaaagcaagcaaagaatgatgaggaacaagctaagattgctcaag |
15065607 |
T |
|
| Q |
130 |
aagatttagattatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatca |
229 |
Q |
| |
|
| |||| ||||| ||| ||| | || || ||||| | |||||| | |||||| || |||| ||||| |||||||| |||| || ||||||||||||||| |
|
|
| T |
15065606 |
aggattcagattctgacacaatgttattgatggttacaacaactagtaatgagagctgcaattcagaaagatggttcttagttactggttgttctaatca |
15065507 |
T |
|
| Q |
230 |
tatgactgcaaataagaattggtt |
253 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
15065506 |
tatgactgaaaataaggattggtt |
15065483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 16596557 - 16596445
Alignment:
| Q |
30 |
tgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaag |
129 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||| | |||| ||||| |
|
|
| T |
16596557 |
tgttataattgagaaatatttggtcattatgcttctgagtgttggactggtaaaaggaagcaatcaaagaaagaagaggaacaagttaaacttgaacaag |
16596458 |
T |
|
| Q |
130 |
aagatttagatta |
142 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
16596457 |
aagattcagatta |
16596445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 40370635 - 40370319
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| |||||||| | |||||||||| || ||||| | |||||| ||||||||| || ||| |||||| | || | ||||| |||| || |
|
|
| T |
40370635 |
tgtgagaaatttggacattatgcctttgaatgttggtctagtaaaggaaagcaatcaaagaatgatgaagaagaagccaaaattgctcaagatgattcag |
40370536 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || ||| ||||| || ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
40370535 |
attctgagtcattattcatgatggttacaacaactagtaatgagagctccaattcagaaagttggttcttagatactggttgttctaatcatatgactgg |
40370436 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
|| | ||| | ||| | |||| | | |||||||||||| |||||||| |||||| |||||||| |||||| | |||| ||||| || |||| | |
|
|
| T |
40370435 |
aactcagacattgttaagagaagtggattctagaagaaacacaaaggtgaaacttgcagatcatagagtcttagttgcagaaggaatggggaacattgct |
40370336 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
40370335 |
attgaaggaaagaatgg |
40370319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 7102762 - 7102446
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
7102762 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
7102663 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
7102662 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
7102563 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
7102562 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
7102463 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
7102462 |
attgaaggaaagaatgg |
7102446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 12020058 - 12020254
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
12020058 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
12020157 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgac |
235 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
12020158 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgac |
12020254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 16795438 - 16795754
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
16795438 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
16795537 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
16795538 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
16795637 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
16795638 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
16795737 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
16795738 |
attgaaggaaagaatgg |
16795754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 15065438 - 15065378
Alignment:
| Q |
298 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
358 |
Q |
| |
|
|||||||||||||||||| | |||| ||| | |||||||||||||| |||||| |||||| |
|
|
| T |
15065438 |
atcatagaacactagttgcagaaggaatgaggaagattgttattgacggaaagagtggaaa |
15065378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 379
Target Start/End: Complemental strand, 22930695 - 22930349
Alignment:
| Q |
33 |
tataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaag |
132 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||| || |||||||| ||||| |||||||||||||||||||||| || | || || |||||| |
|
|
| T |
22930695 |
tataattgtgaaaagtttgccctctatgcatctgaatgccggtctggtaaagggaagaaagtaaagaatgaagaggaacatgctaagattgcaaaagaag |
22930596 |
T |
|
| Q |
133 |
atttagattatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatat |
232 |
Q |
| |
|
| ||||||| ||| ||||||||||| ||||||| ||||| || || ||| || |||| ||| | |||||||| ||||||| || ||| | ||| || || |
|
|
| T |
22930595 |
acttagattctgacacagtcttgttgatggtgacaacaatcagtactgagagctgcaattcaaaaagatggttcttagatactgtttgatttaaccacat |
22930496 |
T |
|
| Q |
233 |
gactgcaaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaag |
332 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| | || | | || | |||||||||||||| |||||| |||| |||||| | |||| ||||||||| |
|
|
| T |
22930495 |
gacttttaataagaatttgttaaaagaaatcgatccttggaagaataccaaggtgaagcttgttgatcatacaacattagttgcagaaggcatgggaaag |
22930396 |
T |
|
| Q |
333 |
attgttattgaaagaaagaatggaaaattaatagtaatttaagatgt |
379 |
Q |
| |
|
|| ||||||| |||||||| ||| |||| | |||||| ||||||| |
|
|
| T |
22930395 |
atatctattgaaggaaagaattgaagattagttgtaattgaagatgt |
22930349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 21848392 - 21848588
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| ||||||| |
|
|
| T |
21848392 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgatttag |
21848491 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgac |
235 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
21848492 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgac |
21848588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 54170732 - 54170536
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
54170732 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
54170633 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgac |
235 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
54170632 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgac |
54170536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 17785006 - 17784785
Alignment:
| Q |
30 |
tgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatacttt-cacaa |
128 |
Q |
| |
|
|||| ||| ||||| || |||||||| | ||||||| |||| ||| |||||||| | |||||||||||||| || ||| ||||||| | ||| | ||| |
|
|
| T |
17785006 |
tgttttaaatgtgagaattttggtcactttgcttctaaatgctggtctggtaaaggaaagcaagtaaagaaagatgagcaacaagctaagatttgcccaa |
17784907 |
T |
|
| Q |
129 |
gaagatttagattatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatc |
228 |
Q |
| |
|
||||||| ||||| | | ||||| || || ||||| | || ||| | |||||| ||| |||| ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
17784906 |
gaagattaagattcttacacagtgttattgatggttacaaaaactagtaatgagagttgcaattcagaaagatggtttttagatactggttgttctaatc |
17784807 |
T |
|
| Q |
229 |
atatgactgcaaataagaattg |
250 |
Q |
| |
|
||||||||| ||||||| |||| |
|
|
| T |
17784806 |
atatgactggaaataaggattg |
17784785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 41946585 - 41946783
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||| |||||||| | |||||| ||||||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
41946585 |
tgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaagccaaaattgcacaagatgattcag |
41946684 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactg |
237 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
41946685 |
attctgagtcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatattggttgttctaatcatatgactg |
41946783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 28647680 - 28647878
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||| |||||||| | |||||| ||||||||| || || |||||| | || | ||||| |||| || |
|
|
| T |
28647680 |
tgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaagccaaaattgcgcaagatgattcag |
28647779 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactg |
237 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || ||| ||||| || ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
28647780 |
attttgagtcattattcatgatggttacaacaactagtaatgagagctacaattcagaaagttggttcttagatactggttgttctaatcatatgactg |
28647878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 201072 - 200756
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
201072 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
200973 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
200972 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
200873 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
200872 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
200773 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
200772 |
attgaaggaaagaatgg |
200756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 315909 - 315593
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
315909 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
315810 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
315809 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
315710 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
315709 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
315610 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
315609 |
attgaaggaaagaatgg |
315593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 30409191 - 30408875
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
30409191 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
30409092 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
30409091 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
30408992 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
30408991 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
30408892 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
30408891 |
attgaaggaaagaatgg |
30408875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 43810871 - 43810555
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
43810871 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
43810772 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
43810771 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
43810672 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
43810671 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
43810572 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
43810571 |
attgaaggaaagaatgg |
43810555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 23254813 - 23255018
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| ||||||||||| | || ||||||||| || || ||||| | ||||||| |||||||| |||| ||||||| | || |||||||||| || |
|
|
| T |
23254813 |
tgtgagaagtttggtcactttgtttctgaatgcgggtctagtaaaggaaagcaagcaaagaatgtagagcaacaagctaagattgttcaagaagattcag |
23254912 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| ||| | || || ||||| | |||||| | |||||| ||| |||| ||||| |||||||| ||||||| | |||||||||||||||||| || |
|
|
| T |
23254913 |
attctgacacaatgttattcatggttacaacaactagtaatgagagttgcaattcagaaagatggttgttagatactagttgttctaatcatatgattgg |
23255012 |
T |
|
| Q |
239 |
aaataa |
244 |
Q |
| |
|
|||||| |
|
|
| T |
23255013 |
aaataa |
23255018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 27571120 - 27570804
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| |||||||| |||||||||||| |||||||| | |||||| ||||||||| || || |||||| | || | ||||| |||| || |
|
|
| T |
27571120 |
tgtgagaaatttggacattatgcatctgaatgttggtctggtaaaggaaagcaatcaaagaatgatgaagaggaagccaaaattgctcaagatgattcag |
27571021 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||| | || ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
27571020 |
attctgagtcattattcatgatggttacaacaactagtaatgagagctgcaattcaaaaagttggttcttagatactggttgttctaatcatatgactgg |
27570921 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
|| |||| ||||| | |||| | | || ||||||||| |||||||| |||||| || ||||| |||||| | |||| ||||| || |||| | |
|
|
| T |
27570920 |
aaccaagacatggttaagagaagtggattctggaagaaacacaaaggtgaaacttgcagataatagagtcttagttgcagaaggaatggggaatattgct |
27570821 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
27570820 |
attgaaggaaagaatgg |
27570804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 8318892 - 8318576
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
8318892 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
8318793 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
8318792 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
8318693 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
8318692 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
8318593 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
8318592 |
attgaaggaaagaatgg |
8318576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 23255072 - 23255132
Alignment:
| Q |
298 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
358 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| || |||| ||||||| ||||||||||||| |
|
|
| T |
23255072 |
atcatagaacactagttgcagaaggaatggggaatattgctattgaaggaaagaatggaaa |
23255132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 48253 - 47937
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
48253 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
48154 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
48153 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
48054 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
48053 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
47954 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
47953 |
attgaaggaaagaatgg |
47937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 26312782 - 26313098
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
26312782 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
26312881 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
26312882 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
26312981 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
26312982 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
26313081 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
26313082 |
attgaaggaaagaatgg |
26313098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 39795164 - 39795480
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
39795164 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
39795263 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
39795264 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
39795363 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
39795364 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
39795463 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
39795464 |
attgaaggaaagaatgg |
39795480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Complemental strand, 7943471 - 7943155
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
7943471 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
7943372 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
7943371 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
7943272 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
7943271 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcataaggaatggggaatattgct |
7943172 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
7943171 |
attgaaggaaagaatgg |
7943155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 27758166 - 27758482
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||| |||||| | | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
27758166 |
tgtgagaaatttggacactatgcctctgaatgttggtctggtataggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
27758265 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
27758266 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
27758365 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
|||||||| ||||| | |||| | | || ||||||| | |||||||| |||||| |||||||| || ||| | |||| ||||| || |||| | |
|
|
| T |
27758366 |
aaataagacatggttaagagaagtggatcctggaagaaatacaaaggtgaaacttgcagatcatagagtcttaattgcagaaggaatggggaatattgct |
27758465 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
27758466 |
attgaaggaaagaatgg |
27758482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 44148327 - 44148643
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
44148327 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
44148426 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
44148427 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
44148526 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
44148527 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
44148626 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
44148627 |
attgaaggaaagaatgg |
44148643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 8052161 - 8052477
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
8052161 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
8052260 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
8052261 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
8052360 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
8052361 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
8052460 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
8052461 |
attgaaggaaagaatgg |
8052477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 355
Target Start/End: Original strand, 36671820 - 36672136
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagccatactttcacaagaagatttag |
138 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| ||| |||||||| | |||||| ||| ||||| || || |||||| | || ||||||| |||| || |
|
|
| T |
36671820 |
tgtgagaaatttggacactatgcctctgaatgctggtctggtaaaggaaagcaatcaaaaaatgatgaagaggaagccaaaattgcacaagatgattcag |
36671919 |
T |
|
| Q |
139 |
attatgatacagtcttgttaatggtgaaaacaaccaataatgaaagtcgcaagtcagatagatggtttttagataatggttgttctaatcatatgactgc |
238 |
Q |
| |
|
||| ||| || | || | ||||| | |||||| | |||||| || |||| ||||| || ||||| ||||||| ||||||||||||||| ||||| | |
|
|
| T |
36671920 |
attctgaatcattattcatgatggttacaacaactagtaatgagagctgcaattcagaaagttggttcttagatactggttgttctaatcacatgacagg |
36672019 |
T |
|
| Q |
239 |
aaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgtt |
338 |
Q |
| |
|
||| |||| ||||| | |||| | | || ||||||| | ||||||||||||||| |||||||| | |||| | |||| ||||| || |||| | |
|
|
| T |
36672020 |
aaacaagacatggttaagagaagtggatcctggaagaaatacaaaggtgaagcttgcagatcatagagtcttggttgcagaaggaatggggaatattgct |
36672119 |
T |
|
| Q |
339 |
attgaaagaaagaatgg |
355 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
36672120 |
attgaaggaaagaatgg |
36672136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 13269916 - 13269872
Alignment:
| Q |
39 |
tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaa |
83 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
13269916 |
tgtgaaaaatttggacattatgcttcagaatgttggtctggtaaa |
13269872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University