View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_high_13 (Length: 500)
Name: NF18003_high_13
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 15801979 - 15802422
Alignment:
| Q |
19 |
gaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801979 |
gaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacc |
15802078 |
T |
|
| Q |
119 |
cataaacattgtcatgatcatcgctgttgttgctacctatgatattatggttagatattgtgcctaagtcagaatctgagtttatccatgagagaaggct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802079 |
cataaacattgtcatgatcatcgctgttgttgctacctatgatgttgtggttagatattgtgcctaagtcagaatctgagtttatccatgagagaaggct |
15802178 |
T |
|
| Q |
219 |
attaacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802179 |
attaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatg |
15802278 |
T |
|
| Q |
319 |
aagaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttgaannnnnnncagtaaccattc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
15802279 |
aagaggaagaaatgaaggaaaatgaagcttagaaaccttgtagtacaagtcatgttgtgttttgacattttcatggttgaatttttttcattaaccattc |
15802378 |
T |
|
| Q |
419 |
caagaattttgttggacataacaatttctgtattttgttctgtg |
462 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15802379 |
caagaattttattggacataacaatttctgtattttgttctgtg |
15802422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 49 - 398
Target Start/End: Original strand, 15794210 - 15794559
Alignment:
| Q |
49 |
tctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgt |
148 |
Q |
| |
|
||||||||| ||||||||||||| ||| | ||||||||||||||||||||||| |||||| | || ||||||||||| | |||||||||| | |||||| |
|
|
| T |
15794210 |
tctctaacaacagtgttgatacaaaattgacagaaacttcctgtgatgtcaccccgacaatcatagaacccataaaccgtatcatgatcattgttgttgt |
15794309 |
T |
|
| Q |
149 |
tgctacctatgatattatggttagatattgtgcctaagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaag |
248 |
Q |
| |
|
||||| ||||| | || |||||||||| ||| | | ||||||| || || ||||||| |||| | | ||||||||||||||||| |||| ||| || |
|
|
| T |
15794310 |
tgctaactatggtgttgtggttagatactgtttgtttggcagaatccgatgttgtccatgacagaaagttgttaacgttggattggtacgaagcgttgag |
15794409 |
T |
|
| Q |
249 |
tgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaagctt |
348 |
Q |
| |
|
| |||||| |||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
15794410 |
tattttttgagttgaattctcgcaaacactatacatataaaatggtgattgtgcagttgttaggatcatgaagaggaggagattaaggagaatgaagctt |
15794509 |
T |
|
| Q |
349 |
agaaaccttttagtacaagtcatgttgtgttttgacgttttcatggttga |
398 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
15794510 |
agaaaccttgtagtataagtcatgttgtgtggtgacgttttcattgttga |
15794559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 46 - 379
Target Start/End: Original strand, 15807625 - 15807958
Alignment:
| Q |
46 |
atttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgt |
145 |
Q |
| |
|
|||||||||| |||||||||||| || ||| | |||||||||| |||| | |||| ||||| | || ||||||||||| | |||| || || ||||| |
|
|
| T |
15807625 |
atttctctaaaagcagtgttgatgcaaaattgacagaaacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcattataattgctgt |
15807724 |
T |
|
| Q |
146 |
tgttgctacctatgatattatggttagatattgtgcctaagtcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgtt |
245 |
Q |
| |
|
|||||||||||||| | || |||||||||| || ||| | ||||||| || || ||||||| | || | | |||||||||||||| ||||||||||| |
|
|
| T |
15807725 |
tgttgctacctatggtgttgtggttagatacagttcctttggcagaatccgatgttgtccatgacaaaaagttgttaacgttggattgatatgaagtgtt |
15807824 |
T |
|
| Q |
246 |
aagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaagaggaagaaatgaaggaaaatgaag |
345 |
Q |
| |
|
| ||||||||| || |||||||||||| |||||||| ||||||||||||||| ||| | ||||| |||||||||||||| |||||| | ||||||| |
|
|
| T |
15807825 |
gactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattgcgcattcgttagcgtcatgaagaggaagtgatgaagtagaatgaag |
15807924 |
T |
|
| Q |
346 |
cttagaaaccttttagtacaagtcatgttgtgtt |
379 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
15807925 |
cttagaaaccttgtagtacaagtcatgttgtgtt |
15807958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 374
Target Start/End: Original strand, 15815673 - 15815823
Alignment:
| Q |
221 |
taacgttggattggtatgaagtgttaagtgttttttctgttgaattctggcaaatactgtacaagtaaaatggtgattgtgcagttgttaggatcatgaa |
320 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||||||||||||| | | || |||| |||||||||||||| |||||| | |||| |
|
|
| T |
15815673 |
taacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgtaatatggtgattgtgcatttgttaag---gtgaa |
15815769 |
T |
|
| Q |
321 |
gaggaagaaatgaaggaaaatgaagcttagaaaccttttagtacaagtcatgtt |
374 |
Q |
| |
|
||| || | |||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15815770 |
gagaaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgtt |
15815823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 15700230 - 15700313
Alignment:
| Q |
25 |
ctgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaa |
108 |
Q |
| |
|
|||||| ||||||||||||| |||||| | ||||||||||||||||| ||| | |||||||||||||||| |||| | |||||| |
|
|
| T |
15700230 |
ctgttaagacaacgttgagcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtgacgtcagcccgacaa |
15700313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 15815471 - 15815562
Alignment:
| Q |
31 |
ggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccata |
122 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||| ||| | |||||||||||||| | |||||| |||||| |||| || ||||| |
|
|
| T |
15815471 |
ggacaacattgagcgatcgctctaacagcagcgttgatacaaaattgacagaaacttcctgttacgtcaccacgacaatcgtagaatccata |
15815562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University