View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_20 (Length: 443)

Name: NF18003_high_20
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_20
NF18003_high_20
[»] scaffold0001 (1 HSPs)
scaffold0001 (20-140)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (18-148)||(11681970-11682100)
chr6 (17-106)||(18985578-18985667)
chr6 (18-65)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (17-106)||(23919850-23919939)
[»] chr8 (1 HSPs)
chr8 (17-106)||(30344110-30344199)
[»] chr7 (5 HSPs)
chr7 (67-148)||(25350428-25350509)
chr7 (67-148)||(25356122-25356203)
chr7 (18-79)||(33098112-33098173)
chr7 (18-65)||(25350264-25350311)
chr7 (18-65)||(25355958-25356005)
[»] chr4 (2 HSPs)
chr4 (61-148)||(1967812-1967899)
chr4 (18-63)||(1967593-1967638)


Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 12564 - 12444
Alignment:
Q  20 aaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggat 119  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  12564 aaacaacattgtaggaggaacacctaaatcgaatagcagcttgtcgccctcttgtaggtaattgtccctaacaaattgtaaccaacctcctcccaaggat 12465  T
Q  120 ttttcagctttgttacgctca 140  Q
    |||||||||||||||||||||    
T  12464 ttttcagctttgttacgctca 12444  T

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Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 11681970 - 11682100
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaagg 117  Q
    |||||||||| |||||||   ||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  11681970 acaaacaacattgtaggaaagacacccaaatcaaatagctacttgtcgtcctcttgtaggtgattgtccctaacaaactggaaccaacctcctcccaagg 11682069  T
Q  118 atttttcagctttgttacgctcaacggtaat 148  Q
    |||||||||| |||||||||||| |||||||    
T  11682070 atttttcagccttgttacgctcagcggtaat 11682100  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 18985578 - 18985667
Alignment:
Q  17 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18985578 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 18985667  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 11681842 - 11681889
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 65  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11681842 acaaacaacattgtaggaggaacacctaaatcaaatagcagcttgtcg 11681889  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 23919939 - 23919850
Alignment:
Q  17 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23919939 cacaaacaacactgtaggaggaacacctaaatcgaatagcagcttgtcgtcctcttgtaggtgattgtccctaacaaattggaaccaacc 23919850  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 30344199 - 30344110
Alignment:
Q  17 cacaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 106  Q
    |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344199 cacaaacaacactgtaggagtaacacctaaatcgaataacagcttgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacc 30344110  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 25350428 - 25350509
Alignment:
Q  67 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 148  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25350428 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25350509  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 25356122 - 25356203
Alignment:
Q  67 cctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 148  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||    
T  25356122 cctcttgtaggtgattgtccctaacaaactggaaccaacctcttcccaaggatttttcagccttgttacgctcagcggtaat 25356203  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 33098112 - 33098173
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcgccctcttgtaggtg 79  Q
    |||||||||| ||||||||||||| | ||||| |||||||||||||| ||||||||||||||    
T  33098112 acaaacaacattgtaggaggaacatccaaatcgaatagcagcttgtcaccctcttgtaggtg 33098173  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 25350264 - 25350311
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 65  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25350264 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25350311  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 25355958 - 25356005
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgtcg 65  Q
    ||||||||||||| |||||||||||| ||||| || ||||||||||||    
T  25355958 acaaacaacactgcaggaggaacacccaaatcgaaaagcagcttgtcg 25356005  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 1967812 - 1967899
Alignment:
Q  61 tgtcgccctcttgtaggtgattgtccctaacaaattggaaccaacctcctctcaaggatttttcagctttgttacgctcaacggtaat 148  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||   |||||||||||| |||||||    
T  1967812 tgtcgtcctcttgtaggtggttgtccctaacaaactggaaccaacctcctcccaatgatttttcaagcttgttacgctcagcggtaat 1967899  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1967593 - 1967638
Alignment:
Q  18 acaaacaacactgtaggaggaacacctaaatcaaatagcagcttgt 63  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  1967593 acaaacaacactgtaggaggaacacccaaatcaaatagcagcttgt 1967638  T

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