View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_high_24 (Length: 434)
Name: NF18003_high_24
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 34076999 - 34076594
Alignment:
| Q |
19 |
ccaacaacgttcgcaggtcggtccatttgcttaaaaagatgaaaccttcactatgcagcaagcaacacaatataccnnnnnnnctcacttcacattatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34076999 |
ccaacaacgttcgcaggtcggtccatttacttaaaaagatgaaaccttcactatgcagcaagcaacacaatataccaaaaaaactcacttcacattatca |
34076900 |
T |
|
| Q |
119 |
tgatcatgatcatnnnnnnnnnnnnnnnngcataaagggtaatggataaaacagtgtttgagattgaacaaaagaagaaaggtgtggttttttacgtggt |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34076899 |
tgatcatgatcataaaagaaaaagaaaaagcataaagggtaatggataaaacagtgtttgagattgaacaaaagaagaaaggtgtggttttttacgtggt |
34076800 |
T |
|
| Q |
219 |
tgatttggtgtggaccacgtaaacagagtttggtgggtatgggtgaataaagagacacgcaaatggttttagctcgtgaaaacttcaccaacctaaatgt |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34076799 |
tgatttggtgtggaccacttaaacagagtttggtgggtatgggtgaataaagagacacgcaaatggttttagctcgtgaaaacttcaccaacctaaatgt |
34076700 |
T |
|
| Q |
319 |
gatgaattgtttgggttggatatgcattgttgagaattgaagacaagagtatgtgtgtgttcctcagcttaaggacggtgatacactcgtgaattttctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34076699 |
gatgaattgtttgggttggatatgcattgttgagaattgaagacaagagtatgtgtgtgttcctcagcttaaggacggtgatacactcgtgaattttctg |
34076600 |
T |
|
| Q |
419 |
tctgtg |
424 |
Q |
| |
|
|||||| |
|
|
| T |
34076599 |
tctgtg |
34076594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University