View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_25 (Length: 433)
Name: NF18003_high_25
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_25 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 35836357 - 35836772
Alignment:
| Q |
18 |
gtatctgacatgtgagattgctaggtagttcttgtttgtttccgcaaattcttgaagaatctttcaatttcatttgctcataatatgacaattttatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35836357 |
gtatctgacatgtgagattgctaggtagttcttgtttgtttccgcaaattcttgaagaatctttcaatttcatttgctcataatatggcaattttatttg |
35836456 |
T |
|
| Q |
118 |
tgtagttttatgtatttggcgtacatgtgtgttgtaatgttctccgtcaaatgcaactactctaggtttaatttaaaggatttaatatctatacaccgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836457 |
tgtagttttatgtatttggcgtacatgtgtgttgtaatgttctccgtcaaatgcaactactctaggtttaatttaaaggatttaatatctatacaccgac |
35836556 |
T |
|
| Q |
218 |
agtgtaaaacttttttacacgtacatccaatcaagccagaccatgtaaatatatgtggggatattttaaaaactaactcgagtataaaagttttgcaccg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35836557 |
agtgtaaaacttttttacacgtacatccaatcaagccagaccatgtaaatatatgtggggatattttaaaaactaattcgagtataaaagttttgcaccg |
35836656 |
T |
|
| Q |
318 |
aaagtgcatatgacataacctctaatttataattgaattatagttggttcttgacagagtttctaaattctgaagtcctattagtaatttaggtatattt |
417 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836657 |
aaagtgcatatgacttaatctctaatttataattgaattatagttggttcttgacagagtttctaaattctgaagtcctattagtaatttaggtatattt |
35836756 |
T |
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| Q |
418 |
cgaaaatgttttctat |
433 |
Q |
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||||||||||||||| |
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| T |
35836757 |
tgaaaatgttttctat |
35836772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 35893074 - 35893489
Alignment:
| Q |
18 |
gtatctgacatgtgagattgctaggtagttcttgtttgtttccgcaaattcttgaagaatctttcaatttcatttgctcataatatgacaattttatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35893074 |
gtatctgacatgtgagattgctaggtagttcttgtttgtttccgcaaattcttgaagaatctttcaatttcatttgctcataatatggcaattttatttg |
35893173 |
T |
|
| Q |
118 |
tgtagttttatgtatttggcgtacatgtgtgttgtaatgttctccgtcaaatgcaactactctaggtttaatttaaaggatttaatatctatacaccgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35893174 |
tgtagttttatgtatttggcgtacatgtgtgttgtaatgttctccgtcaaatgcaactactctaggtttaatttaaaggatttaatatctatacaccgac |
35893273 |
T |
|
| Q |
218 |
agtgtaaaacttttttacacgtacatccaatcaagccagaccatgtaaatatatgtggggatattttaaaaactaactcgagtataaaagttttgcaccg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35893274 |
agtgtaaaacttttttacacgtacatccaatcaagccagaccatgtaaatatatgtggggatattttaaaaactaattcgagtataaaagttttgcaccg |
35893373 |
T |
|
| Q |
318 |
aaagtgcatatgacataacctctaatttataattgaattatagttggttcttgacagagtttctaaattctgaagtcctattagtaatttaggtatattt |
417 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35893374 |
aaagtgcatatgacttaatctctaatttataattgaattatagttggttcttgacagagtttctaaattctgaagtcctattagtaatttaggtatattt |
35893473 |
T |
|
| Q |
418 |
cgaaaatgttttctat |
433 |
Q |
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||||||||||||||| |
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| T |
35893474 |
tgaaaatgttttctat |
35893489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 26023581 - 26023637
Alignment:
| Q |
195 |
ggatttaatatctatacaccgacagtgtaaaacttttttacacgtacatccaatcaa |
251 |
Q |
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||||||||| | ||| || ||| |||||||||| ||||||||||| ||||||||||| |
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| T |
26023581 |
ggatttaatctatattcatcgatagtgtaaaacctttttacacgtgcatccaatcaa |
26023637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 11549566 - 11549535
Alignment:
| Q |
199 |
ttaatatctatacaccgacagtgtaaaacttt |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11549566 |
ttaatatctatacaccgacagtgtaaaacttt |
11549535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 32996213 - 32996169
Alignment:
| Q |
207 |
tatacaccgacagtgtaaaacttttttacacgtacatccaatcaa |
251 |
Q |
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||||||||||||||| ||||||||||||||| | | ||||||||| |
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| T |
32996213 |
tatacaccgacagtgcaaaacttttttacacatgcttccaatcaa |
32996169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 23422573 - 23422619
Alignment:
| Q |
191 |
taaaggatttaatatctatacaccgacagtgtaaaacttttttacac |
237 |
Q |
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||||||||||||| | ||||| |||||||||||||||||||| |||| |
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| T |
23422573 |
taaaggatttaatttgtatacgccgacagtgtaaaactttttcacac |
23422619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 45161515 - 45161547
Alignment:
| Q |
219 |
gtgtaaaacttttttacacgtacatccaatcaa |
251 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
45161515 |
gtgtaaaacttttttacacgtgcatccaatcaa |
45161547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 12043490 - 12043450
Alignment:
| Q |
197 |
atttaatatctatacaccgacagtgtaaaacttttttacac |
237 |
Q |
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||||||| | |||||||||||| |||||||||||||||||| |
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| T |
12043490 |
atttaatttgtatacaccgacaatgtaaaacttttttacac |
12043450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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