View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_29 (Length: 405)
Name: NF18003_high_29
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 36041090 - 36041462
Alignment:
| Q |
17 |
aatatccgaatggaaaacaggttctatgtccttaagcttatgttcattgctaaactcatctcaaccatcacttaatcttaccatatcaaaaaaccaccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36041090 |
aatatccgaatggaaaacaggttctatgtccttaagcttatgttcattgctaaactcatctcaaccatcacttaatcttaccatatcaaaaaaccaccaa |
36041189 |
T |
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| Q |
117 |
tcccaaaaactcttttttgctattgtggcagattataatatccctatttttctttggacctcaaaaccattcaaacctagcaataaaatatcacatgaag |
216 |
Q |
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| T |
36041190 |
tcccaaaaactctcttttgctattgtggcagattataatatccctatttttctttggacctcaaaaccattcaaacctagcaataaaatatcacatgaag |
36041289 |
T |
|
| Q |
217 |
aaaccatttcaaatctccttgttaatttcatacaagacatccttaattatggttcaaaaaataatctattcattaaatttccaaaacttgaaactattcc |
316 |
Q |
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| T |
36041290 |
aaaccatttcaaatctccttgttaatttcatacaagacatccttaattatggttcaaaaaataatctattcattaaatttccaaaacttgaaactattcc |
36041389 |
T |
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| Q |
317 |
aaactttagtgacattttcaaccttgcttttttaactctcttattcttggtttgtatttacgaagctccttcg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36041390 |
aaactttagtgacattttcaaccttgcttttttaactctcttattcttggtttgtatttacgaagctccttcg |
36041462 |
T |
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Back To:
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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 32316434 - 32316494
Alignment:
| Q |
214 |
aagaaaccatttcaaatctccttgttaatttcatacaagacatccttaattatggttcaaa |
274 |
Q |
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||||||| |||||||||||| || |||||||||| |||||||| ||| ||||||||||||| |
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| T |
32316434 |
aagaaactatttcaaatctctttattaatttcattcaagacattcttcattatggttcaaa |
32316494 |
T |
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