View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_30 (Length: 403)
Name: NF18003_high_30
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 9590099 - 9589726
Alignment:
| Q |
17 |
accaattagggagttaacttttttgatgccaggtgatagagaattatctgccacgactatttcagctaattaatggaattgaagatttcatactaagtca |
116 |
Q |
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| T |
9590099 |
accaattagggagttaactttttttatgccaggtgatagagaattgtctgcctcagctatttcagctaat----ggaattgaagatttcatactaagtca |
9590004 |
T |
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| Q |
117 |
tgcaattcctatgccattagtcttcaatgatttatctcattttccaactggtactca-gttccttcaggaatgagctccaaaatgatgaggat--tcata |
213 |
Q |
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| T |
9590003 |
tgcaattcctatgccattagtcttcaatgatttatctcattttccaactggtactcttgttccttcaggaatgagctccaaaatgatgaggatgatcata |
9589904 |
T |
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| Q |
214 |
accgtggtagaggagagttctttgttaataatgcgcaaattgtttcggataatatttgtttgagctctatcatcaaatgtcatggagttgatgcattgat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9589903 |
accgtggtagaggagagttctttgttaataatgcgcaaattgtttcggctaatatttgtttgagctctatcatcaaatgtcatggagttgatgcattgat |
9589804 |
T |
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| Q |
314 |
tgaatatgattgattgata--tatacttatgaaatatgtttaattacattatgtaatgttccaatatcataaaggaat |
389 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9589803 |
tgaatatgattgattgatatatatacttatgaaatatatttaattacattatgtaatgttccaatatcataaaggaat |
9589726 |
T |
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