View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_31 (Length: 398)
Name: NF18003_high_31
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 38735885 - 38736267
Alignment:
| Q |
1 |
ttcattttatgtccgaaaacccaaagccttcaaaggacccacatggaagaatattaaccaaaccccttgcacttacagccacagaaacacaacaaaaaca |
100 |
Q |
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| T |
38735885 |
ttcattttatgtctgaaaacccaaagccttcaaaggacccacatggaagaagattaaccaaaccccttgcacttacagccacagaaacacaacaaaaaca |
38735984 |
T |
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| Q |
101 |
acccaacattcaaccactcatggatctcttaaaatcctgcgaacaaaacgggtctctgaaacaagcgaattgcattcatgggcatgttttaaaatctggt |
200 |
Q |
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| T |
38735985 |
acccaacattcaaccactcattgatctcttaaaatcctgcgaacaaaacgggtctctgaaacaagcgaattgcattcatgggcatgttttaaaatctggt |
38736084 |
T |
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| Q |
201 |
tttggtgacagagacaacttggtgtttttgaatcatgtagttcatgcttactcaaaatgcaaggattatgattctgctcgtaaggtgtttgatggtatgt |
300 |
Q |
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| T |
38736085 |
tttggtgacagagacaacttggtgtttttgaatcatgtagttcatgcttactcaaaatgcaaggattatgattctgctcgtaaggtgtttgatggtatgt |
38736184 |
T |
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| Q |
301 |
ctgaaagaaatgtgttttcttggactgtcatgattgttgcttcaaacgaacatggttactatcgttacgcgttggagcttttt |
383 |
Q |
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| T |
38736185 |
ctgaaagaaatgtgttttcttggactgtcatgattgttgcttcaaacgaacatggttactatcgttacgcgttggagcttttt |
38736267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 42761153 - 42761205
Alignment:
| Q |
275 |
tgctcgtaaggtgtttgatggtatgtctgaaagaaatgtgttttcttggactg |
327 |
Q |
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| T |
42761153 |
tgctcgtaaggtgtttgatgaattgtctgacagaaatgtggtttcttggactg |
42761205 |
T |
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