View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18003_high_32 (Length: 373)
Name: NF18003_high_32
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 26880118 - 26879768
Alignment:
| Q |
7 |
gaagcaaaggcactgagcgataagatgatactacacacatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggta |
106 |
Q |
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| T |
26880118 |
gaagaaaagacactgagcgataagatgatactacacacatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggta |
26880019 |
T |
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| Q |
107 |
tattttaaatcacattcaaatgtcaggttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatcttta |
206 |
Q |
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| T |
26880018 |
tattttaaatcacattcaaatgtcaagttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatcttta |
26879919 |
T |
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| Q |
207 |
ttgccacaaaatttgcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaacagtcagatta |
306 |
Q |
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| T |
26879918 |
ttgccacagaatttgcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacattatgagatgttcccagcacggactaacagtcagatta |
26879819 |
T |
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| Q |
307 |
gtcaattttttatgatcgcaatatggctatcaactttattatgatatttat |
357 |
Q |
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| T |
26879818 |
gtcaattttttatgatcgcaatatggctatcaactttattatgatatttat |
26879768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 40249539 - 40249366
Alignment:
| Q |
121 |
ttcaaatgtcaggttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaattt |
220 |
Q |
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| T |
40249539 |
ttcaaacgtcagcttttatctttgtacttgcaagatctcaacactttttctgattttccta-atgtcatatttgttttgatct--actgcaacagaattt |
40249443 |
T |
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| Q |
221 |
gcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaaca |
297 |
Q |
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| T |
40249442 |
gcttgttgatgaattgaagctagcagaaattggcccaaaatttgaacatcacgaggtgttccctgcacgaactaaca |
40249366 |
T |
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