View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_33 (Length: 369)

Name: NF18003_high_33
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_33
NF18003_high_33
[»] chr2 (24 HSPs)
chr2 (7-348)||(387343-387693)
chr2 (92-348)||(39338510-39338777)
chr2 (92-348)||(10524269-10524529)
chr2 (92-348)||(7874459-7874709)
chr2 (92-348)||(14106172-14106435)
chr2 (108-348)||(17116553-17116792)
chr2 (92-186)||(14436916-14437010)
chr2 (98-213)||(41877207-41877322)
chr2 (92-348)||(7460844-7461107)
chr2 (92-187)||(5254590-5254684)
chr2 (92-344)||(14405370-14405630)
chr2 (92-187)||(43816096-43816191)
chr2 (92-189)||(3745676-3745773)
chr2 (99-188)||(13512495-13512584)
chr2 (98-187)||(43248882-43248971)
chr2 (93-169)||(15457817-15457893)
chr2 (92-189)||(45311453-45311550)
chr2 (102-213)||(22888552-22888662)
chr2 (92-158)||(9823695-9823761)
chr2 (99-175)||(7455601-7455676)
chr2 (92-160)||(25280964-25281032)
chr2 (210-311)||(5254459-5254557)
chr2 (160-189)||(15457278-15457307)
chr2 (214-242)||(22884931-22884959)
[»] chr7 (24 HSPs)
chr7 (92-348)||(31971784-31972046)
chr7 (92-348)||(47325534-47325797)
chr7 (93-348)||(3867285-3867545)
chr7 (92-348)||(5859932-5860200)
chr7 (92-345)||(44353213-44353473)
chr7 (92-348)||(10244351-10244612)
chr7 (131-348)||(38306430-38306653)
chr7 (92-344)||(3419048-3419304)
chr7 (94-348)||(37795158-37795426)
chr7 (92-338)||(25160992-25161240)
chr7 (106-344)||(3419321-3419563)
chr7 (93-342)||(41089396-41089654)
chr7 (92-348)||(6585050-6585318)
chr7 (92-213)||(33434480-33434601)
chr7 (92-324)||(40726140-40726392)
chr7 (94-213)||(37795635-37795754)
chr7 (92-213)||(34391493-34391614)
chr7 (92-213)||(42454383-42454504)
chr7 (92-211)||(48161690-48161808)
chr7 (97-197)||(43482232-43482331)
chr7 (94-189)||(11378772-11378866)
chr7 (92-348)||(35745481-35745735)
chr7 (289-348)||(33435278-33435337)
chr7 (287-344)||(34390134-34390192)
[»] chr3 (26 HSPs)
chr3 (92-348)||(2392152-2392418)
chr3 (92-348)||(47235867-47236130)
chr3 (92-348)||(2393915-2394182)
chr3 (92-348)||(19176673-19176938)
chr3 (104-348)||(43012544-43012796)
chr3 (92-346)||(45164026-45164285)
chr3 (92-348)||(53248069-53248332)
chr3 (92-348)||(34475407-34475666)
chr3 (100-345)||(9583710-9583963)
chr3 (98-348)||(40023224-40023485)
chr3 (92-193)||(21343678-21343779)
chr3 (92-348)||(23327997-23328263)
chr3 (114-348)||(30352110-30352351)
chr3 (92-213)||(31483191-31483312)
chr3 (92-213)||(50305223-50305344)
chr3 (99-348)||(17551121-17551382)
chr3 (92-311)||(45399002-45399217)
chr3 (245-348)||(20611952-20612054)
chr3 (94-210)||(37158618-37158735)
chr3 (92-189)||(4463734-4463831)
chr3 (92-187)||(25506719-25506814)
chr3 (98-190)||(50559978-50560070)
chr3 (92-155)||(47439284-47439347)
chr3 (92-185)||(5556918-5557011)
chr3 (217-326)||(7105031-7105140)
chr3 (214-247)||(32010030-32010063)
[»] chr5 (13 HSPs)
chr5 (92-344)||(18593416-18593674)
chr5 (92-348)||(7161663-7161928)
chr5 (92-338)||(29087659-29087903)
chr5 (92-348)||(34378267-34378531)
chr5 (92-213)||(698678-698799)
chr5 (92-197)||(7452915-7453020)
chr5 (99-212)||(5656749-5656862)
chr5 (92-182)||(18313303-18313393)
chr5 (92-185)||(18255099-18255192)
chr5 (287-348)||(698530-698591)
chr5 (143-194)||(41250893-41250944)
chr5 (212-247)||(7195078-7195113)
chr5 (212-256)||(30097593-30097636)
[»] chr8 (27 HSPs)
chr8 (92-348)||(31207011-31207274)
chr8 (92-345)||(20138598-20138858)
chr8 (92-348)||(24995044-24995307)
chr8 (92-348)||(12897925-12898187)
chr8 (96-348)||(37986508-37986770)
chr8 (92-348)||(9519668-9519938)
chr8 (92-348)||(32065934-32066207)
chr8 (92-348)||(15821026-15821292)
chr8 (96-326)||(16457128-16457365)
chr8 (92-213)||(22773932-22774053)
chr8 (92-303)||(36631038-36631254)
chr8 (95-311)||(35815896-35816121)
chr8 (147-348)||(34388711-34388918)
chr8 (92-348)||(41893052-41893314)
chr8 (93-196)||(35821583-35821685)
chr8 (92-213)||(3584048-3584170)
chr8 (131-213)||(27889157-27889239)
chr8 (131-213)||(27947815-27947897)
chr8 (92-185)||(13538324-13538417)
chr8 (92-185)||(13686057-13686150)
chr8 (92-152)||(9659474-9659534)
chr8 (98-179)||(38577441-38577522)
chr8 (243-325)||(35821432-35821514)
chr8 (92-128)||(34866309-34866345)
chr8 (147-190)||(10837941-10837984)
chr8 (271-317)||(22773815-22773861)
chr8 (217-305)||(17656518-17656606)
[»] chr4 (19 HSPs)
chr4 (92-348)||(8255196-8255459)
chr4 (92-348)||(8268614-8268877)
chr4 (92-348)||(8705789-8706056)
chr4 (92-326)||(30964628-30964869)
chr4 (92-213)||(35329318-35329439)
chr4 (108-321)||(20464786-20465005)
chr4 (92-213)||(27555579-27555701)
chr4 (92-193)||(7703018-7703118)
chr4 (92-344)||(30167212-30167472)
chr4 (92-196)||(4306033-4306136)
chr4 (92-189)||(46698428-46698525)
chr4 (96-189)||(49528421-49528514)
chr4 (92-187)||(2826118-2826213)
chr4 (93-211)||(11281375-11281493)
chr4 (92-213)||(36689454-36689575)
chr4 (98-187)||(35341006-35341097)
chr4 (97-346)||(31050315-31050572)
chr4 (92-175)||(9750116-9750198)
chr4 (98-190)||(52868766-52868859)
[»] chr1 (21 HSPs)
chr1 (96-348)||(24449584-24449842)
chr1 (92-348)||(41920626-41920889)
chr1 (92-309)||(30685573-30685797)
chr1 (92-348)||(5459330-5459587)
chr1 (92-348)||(5389077-5389333)
chr1 (143-348)||(46692519-46692731)
chr1 (99-326)||(46814121-46814358)
chr1 (92-213)||(31584689-31584809)
chr1 (92-303)||(24684142-24684358)
chr1 (92-196)||(6804866-6804969)
chr1 (92-196)||(7002515-7002619)
chr1 (92-197)||(40216155-40216260)
chr1 (92-189)||(14320658-14320755)
chr1 (92-213)||(24659241-24659351)
chr1 (98-348)||(27031496-27031753)
chr1 (287-346)||(31585610-31585670)
chr1 (243-318)||(6804739-6804814)
chr1 (279-348)||(7857821-7857891)
chr1 (214-300)||(32882583-32882668)
chr1 (287-335)||(6764232-6764280)
chr1 (287-331)||(24659113-24659158)
[»] scaffold0343 (1 HSPs)
scaffold0343 (98-348)||(5875-6131)
[»] chr6 (10 HSPs)
chr6 (92-348)||(10542001-10542262)
chr6 (96-344)||(3117666-3117922)
chr6 (92-264)||(3254211-3254389)
chr6 (210-345)||(14663249-14663384)
chr6 (92-239)||(15944274-15944431)
chr6 (135-189)||(33697789-33697843)
chr6 (92-176)||(15132489-15132573)
chr6 (97-165)||(14663414-14663480)
chr6 (212-248)||(15120380-15120416)
chr6 (101-129)||(16598939-16598967)
[»] scaffold0085 (1 HSPs)
scaffold0085 (92-211)||(48648-48767)
[»] scaffold0172 (1 HSPs)
scaffold0172 (93-196)||(19245-19349)
[»] scaffold0434 (1 HSPs)
scaffold0434 (115-213)||(2345-2443)
[»] scaffold0068 (2 HSPs)
scaffold0068 (210-348)||(35554-35684)
scaffold0068 (92-145)||(35473-35526)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 387693 - 387343
Alignment:
Q  7 tgagatgaattacatttacatcaacctaataatttgtaccaaactttcttgattttggctattgcatgactgannnnnnnnnnnnaatcggcaaatatta 106  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||              ||||| || ||||||    
T  387693 tgagatggattacatttacatgaacctaataatttgtaccaaactttcttgattttggctattgcataactttttttttttttttaatcgacagatatta 387594  T
Q  107 ttaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaa 206  Q
    |||||||||||| ||||||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  387593 ttaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacttaaaaacacccatgaa 387494  T
Q  207 gataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcac 296  Q
    |||||||          |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||    
T  387493 gataaacccaccaaaacacatcaccacctaaaacagactccttcacaaaaa-caagcattgtaaacacaaaattcaccaccgcccatcgtcactattcac 387395  T
Q  297 ccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  387394 ccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctga 387343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 39338510 - 39338777
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| ||||  || |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T
Q  192 aaaaactcccctgaagat----------aaacacatca-ccacctaaaacagactc-cttcacaaaaaacaagcactgtaaacacaaaattcaccaccgc 279  Q
     ||||| |||||||||||          |||||||||| |||||||||||||||||     | ||||||||||||||||||||| |  || ||||| |||    
T  39338610 gaaaacacccctgaagataaacccaccaaaacacatcacccacctaaaacagactcaaaaaaaaaaaaacaagcactgtaaaca-agtatccaccatcgc 39338708  T
Q  280 ccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||  |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  39338709 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctga 39338777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 10524529 - 10524269
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| || ||| |||||||  |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||| |||||  |||||||| ||||     |||||||||||||| ||||||||   || |||||||||||    
T  10524430 aaaaacacccctgaagataaacccaccaaaacacgtcaccgtctaaaacaaactc-----caaaaaacaagcaccgtaaacacggtatccaccaccgccc 10524336  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||    
T  10524335 atcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctga 10524269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 7874709 - 7874459
Alignment:
Q  92 aatcggcaaatattattaaa-cgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    |||| ||||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7874709 aatcagcaaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T
Q  191 taaaaactcccctgaagataaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccact 290  Q
     || ||  |||||||| ||||||       ||||||| || ||| |||| || | |||||| |||||||||||||  || ||| ||| ||||||  ||||    
T  7874609 aaacaaagcccctgaatataaac------tcacctaagacggacaccttgac-agaaacaaacactgtaaacacagtatccacaaccacccatcgtcact 7874517  T
Q  291 actcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||| |||||||||||| |||||||||||||||||| ||||  |||||||||||||||    
T  7874516 actca-ccccaaagaacatccctcaaaataaaactccaagacttcaacacccaagctga 7874459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 14106172 - 14106435
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| ||||| ||||||||  | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  14106172 aatcagcaaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc- 14106269  T
Q  192 aaaaactcccctgaagat---------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccca 282  Q
    ||| |  |||||||||||         ||||||| |||||||||| || ||| |||| || | |||||| || ||||||||||  || ||| ||| | ||    
T  14106270 aaacaagcccctgaagataacccaccaaaacacaacaccacctaagacggacaccttaac-agaaacaaacattgtaaacacagtatccacaaccactca 14106368  T
Q  283 tcaccactactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||  |||||||||||||||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  14106369 tcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctga 14106435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 348
Target Start/End: Original strand, 17116553 - 17116792
Alignment:
Q  108 taaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaag 207  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    ||      |  |     
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacccctgaagataaatccac 17116652  T
Q  208 ataaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaac 307  Q
    | |||||||||||| |||||||||||||     | |||||| |||||||||||||||   || ||||||||||||||  || ||||||||| ||||||||    
T  17116653 agaaacacatcaccgcctaaaacagact--aaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaac 17116750  T
Q  308 accctcaaaat-aaaactcctagaccccaacacccaagctga 348  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  17116751 accctcaaaataaaaactctcagaccccaacacccaagctga 17116792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 14436916 - 14437010
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 186  Q
    |||| ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 41877207 - 41877322
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 197  Q
    |||||||||||||||  ||||||||||||||  ||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaac 41877306  T
Q  198 tcccctgaagataaac 213  Q
     |||||||||||||||    
T  41877307 acccctgaagataaac 41877322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 7461107 - 7460844
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||||||||||||||||||  |  ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||||||||     
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagacgcagagtatg-acgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc- 7461010  T
Q  192 aaaaactcccctgaagat---------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccca 282  Q
    ||| |  |||||||||||         || |||| |||| ||||| || ||| |||| || | |||||| |||||||||||||| || ||| ||| | ||    
T  7461009 aaacaagcccctgaagataacccaccaaatcacaacaccgcctaagacggacaccttaac-agaaacaaacactgtaaacacaatatccacaaccacaca 7460911  T
Q  283 tcaccactactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||  ||||||||| |||||||||||| |||||||||||||||||| ||||  |||||||||||||||    
T  7460910 tcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctga 7460844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 5254684 - 5254590
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  5254684 aatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaa-tagatacaaatggtgccgcatatagacggtacaccataacc 5254590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 344
Target Start/End: Complemental strand, 14405630 - 14405370
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||| || || ||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14405630 aatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T
Q  192 aaaaactcccctgaagat---------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccca 282  Q
    || ||  ||||| |||||         |||||||||||||||||| || ||| |||| || ||||| || |||| |||| ||| | | ||| | | ||||    
T  14405531 aacaaagcccctaaagataacctaccaaaacacatcaccacctaagacggacaccttaac-aaaaataaacactataaa-acacagtccacaatcaccca 14405434  T
Q  283 tcaccactactcaccccc-aaagaaca-ccctcaaaataaaactcctagaccccaacacccaag 344  Q
    |   |||||||||||||| |||||||| |||||||||||||||||| ||||  |||||||||||    
T  14405433 ttgtcactactcacccccaaaagaacatccctcaaaataaaactcccagacttcaacacccaag 14405370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 43816096 - 43816191
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 3745773 - 3745676
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    |||||||||||||||||||| |||||||||  |||||  |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  99 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 188  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 43248882 - 43248971
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    |||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatat 169  Q
    ||||||||||| ||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 45311453 - 45311550
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    ||||||| |||||||||||||| || ||||||||||   |||| | |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311453 aatcggccaatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 22888552 - 22888662
Alignment:
Q  102 tattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactccc 201  Q
    |||||||||| |||||||| |||||||  || ||||||| |||||||| || |||||||||| ||||||||||||| | |||||||| |||| ||| |||    
T  22888552 tattattaaatgtcatccc-gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacaccc 22888650  T
Q  202 ctgaagataaac 213  Q
    ||||||||||||    
T  22888651 ctgaagataaac 22888662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 9823761 - 9823695
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatg 158  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||| | |||||||||||||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 7455676 - 7455601
Alignment:
Q  99 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 175  Q
    ||||| ||||||||||||||||||||||||  | |||||| |||||| |||||||||||||||||||| ||||||||    
T  7455676 aaataatattaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggt 160  Q
    |||||| ||||||||||||||||||||||| ||||||  | |||||||||||||||||||| |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 5254557 - 5254459
Alignment:
Q  210 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacac 309  Q
    |||||||||||||||||| || ||| |||| ||| ||| ||| |||||||||||||  || ||| ||| ||||||  |||||||||  ||||||||||||    
T  5254557 aaacacatcaccacctaagacggacaccttaacagaaa-caaacactgtaaacacagtatccacaaccacccatcgtcactactca--cccaaagaacac 5254461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 189
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  160 tgccgcatatagacggtacaccataaccac 189  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 22884931 - 22884959
Alignment:
Q  214 acatcaccacctaaaacagactccttcac 242  Q
    |||||||||||||||||||||||||||||    
T  22884931 acatcaccacctaaaacagactccttcac 22884959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 31971784 - 31972046
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 31971883  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||| ||||||||||||| |||||     ||||||||||||||||||||||   ||  ||||||||||    
T  31971884 aaaaacacccctgaagataaacccaccaaaacacataaccacctaaaacaaactcc----aaaaaaacaagcactgtaaacacggtatcaaccaccgccc 31971979  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31971980 atcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctga 31972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 47325534 - 47325797
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    ||||||  | ||||||||          |||||||||||||||||||||| |||  |  | |||||||||||||||||||||||  || || || |||||    
T  47325634 aaaaac-actctgaagataaacccaccaaaacacatcaccacctaaaacaaact--tcaaaaaaaaacaagcactgtaaacacagtatccatcatcgccc 47325730  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47325731 atcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctga 47325797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 93 - 348
Target Start/End: Complemental strand, 3867545 - 3867285
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 192  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  3867545 atcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacata 3867447  T
Q  193 aaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccca 282  Q
    ||||| |||||||||||          ||||||||||||||| |||||| |||||||||| |||||||   ||||||||||| | || |||||||| |||    
T  3867446 aaaacacccctgaagataaactcaccaaaacacatcaccacccaaaacaaactccttcac-aaaaaca---actgtaaacacgatatccaccaccgtcca 3867351  T
Q  283 tcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||  |||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||    
T  3867350 tcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactccaacacccaagctga 3867285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 5859932 - 5860200
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 5860031  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagact--ccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgc 279  Q
    |||||| ||||| |||||          ||||||||||||||||||||||||||       | |||||||||||||| | |||||   ||||||||  ||    
T  5860032 aaaaacacccctaaagataatcccaccaaaacacatcaccacctaaaacagactaaaaaaaaaaaaaaacaagcactattaacacggtattcaccattgc 5860131  T
Q  280 ccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||  ||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  5860132 ccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctga 5860200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 92 - 345
Target Start/End: Original strand, 44353213 - 44353473
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| ||| || ||||          ||||||||||||||||||||||||||||     ||||| ||||||||||||||||   || |||||||| ||    
T  44353313 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc----aaaaaatcaagcactgtaaacacggtatccaccaccgtcc 44353408  T
Q  282 atcaccactactcacccccaaagaacaccctc-aaaataaaactcctagaccccaacacccaagc 345  Q
    |||  |||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  44353409 atcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagc 44353473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 10244612 - 10244351
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||  |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||||||| ||||     ||||||| |||||| |||||||    || ||||| |||||    
T  10244512 aaaaacacccctgaagataagtccacgaaaacacatcaccacctaaaacaaactc-----caaaaaataagcaccgtaaacatggtatccaccatcgccc 10244418  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||||| ||||||| || ||||| ||| |||||| ||||||||||||||    
T  10244417 atcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctga 10244351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 348
Target Start/End: Complemental strand, 38306653 - 38306430
Alignment:
Q  131 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||          |||||||||||    
T  38306653 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacatcac 38306554  T
Q  221 cacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataa 320  Q
    ||||||||||| |||||    ||||||||||| |||| | |||| | || ||||||| ||||||  |||||||||||  |||||||||||||||||||||    
T  38306553 cacctaaaacaaactcc----caaaaaacaagaactgcagacacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataa 38306458  T
Q  321 aactcctagaccccaacacccaagctga 348  Q
    |||||  |||||||||||||||||||||    
T  38306457 aactcacagaccccaacacccaagctga 38306430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 92 - 344
Target Start/End: Original strand, 3419048 - 3419304
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419145  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| | |||||||||          ||||||| |||||||||||||||| |||     |||||||||||| ||||||||  | || ||||||||  |    
T  3419146 aaaaacactcctgaagataaactcaccaaaacacaacaccacctaaaacagaatcc----aaaaaaacaagcattgtaaacatgatatccaccaccgttc 3419241  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
    |||| |||||||||| | |||| |||||||| ||||||||||||| | |||||||||||||||    
T  3419242 atcatcactactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaag 3419304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 94 - 348
Target Start/End: Complemental strand, 37795426 - 37795158
Alignment:
Q  94 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 193  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795327  T
Q  194 aaactcccctgaagat----------aaacacatcaccacctaaaacagactcc----ttcacaaaaaacaagcactgtaaacacaaaattcaccaccgc 279  Q
    |||| ||| |||||||          ||||| ||||||||||||||||||||||       | |||||| |||||||||||||||   || |||||||||    
T  37795326 aaacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactccaaaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgc 37795227  T
Q  280 ccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||||  |||||| | || ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  37795226 ccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctga 37795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 338
Target Start/End: Complemental strand, 25161240 - 25160992
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    ||||||  ||||| ||||          ||||||||||||||||||||||||||      ||||||||||||| |||||||| |  || ||||| |||||    
T  25161140 aaaaac-accctggagataaacccaccaaaacacatcaccacctaaaacagact-----tcaaaaaacaagcaatgtaaacatagtatccaccaacgccc 25161047  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaaca 338  Q
    |||  |||||||||||| ||||||||||| | |||  |||||||  |||||||||||    
T  25161046 atcgtcactactcacccacaaagaacacctttaaa--aaaactctcagaccccaaca 25160992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 106 - 344
Target Start/End: Original strand, 3419321 - 3419563
Alignment:
Q  106 attaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctga 205  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||| | |||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacctaaaaacactcctga 3419418  T
Q  206 agat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactca 295  Q
    ||||          ||||||| |||||||||||||||| |||     ||||||||| || ||||||||  | || ||||||||  ||||  |||||||||    
T  3419419 agataaactcaccaaaacacaacaccacctaaaacagaatcc----aaaaaaacaancattgtaaacatgatatccaccaccgttcatcgtcactactca 3419514  T
Q  296 cccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
    | | ||||||||||||| ||||||||||||| | |||||||||||||||    
T  3419515 ctcacaaagaacacccttaaaataaaactcccaaaccccaacacccaag 3419563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 342
Target Start/End: Original strand, 41089396 - 41089654
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 192  Q
    ||||||||||||||||||| | |||| | ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagaca--aggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccaccta 41089492  T
Q  193 aaaactcccctgaagat----------aaacacatcaccacctaaaacagactcc---ttcacaaaaaacaagcactgtaaacacaaaattcaccaccgc 279  Q
    ||||| ||| |||||||          |||||||||| |||||||||||||||||      | ||||||||||   ||||||||||  ||  ||||||||    
T  41089493 aaaacacccatgaagataaatccaccaaaacacatcatcacctaaaacagactccaaaaaaaaaaaaaacaagtcatgtaaacacagtatctaccaccgc 41089592  T
Q  280 ccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacaccca 342  Q
    ||||   ||||| | |||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  41089593 ccattgtcacta-ttacccgcaaagaacaccctcaaaataaaactcccagaccctaacaccca 41089654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 6585318 - 6585050
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| |||||||||||||   |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacca 6585219  T
Q  192 aaaaactcccctgaaga----------taaacacatca-ccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcc 280  Q
    || ||  ||||||||||          ||||||||||| || ||||| || ||| |||| ||| |||  || ||||| |||||||  || ||| ||| |     
T  6585218 aacaaaacccctgaagataaagccacctaaacacatcacccccctaagacggacaccttaacagaaacaaaacactgaaaacacagtatccacaaccact 6585119  T
Q  281 catcaccactactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||  ||||||||||| ||||| | || |||||||||||||||||| ||||  |||||||||||||||    
T  6585118 catcgtcactactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacccaagctga 6585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 33434480 - 33434601
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| |||||| | ||||||    
T  33434580 aaaaacacccctggaaataaac 33434601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 324
Target Start/End: Original strand, 40726140 - 40726392
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaag--------------atacaaatggtgccgcatatagacggta 177  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||              ||||||||| |||  |||||||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagatacacgaaacaaaatacaaatgatgctacatatagacggta 40726239  T
Q  178 caccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaa 267  Q
    |||||||||||||||||||| |||||| ||||          |||||||| ||||||||||||||||||   || ||||| ||||||| ||||||||       
T  40726240 caccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaacagactc---caaaaaaatcaagcacggtaaacacggt 40726336  T
Q  268 attcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaact 324  Q
    || |||||||||| |||| ||||||||| || |||||||||||||||||||||||||    
T  40726337 atccaccaccgcctatcatcactactca-ccacaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 37795754 - 37795635
Alignment:
Q  94 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 193  Q
    |||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795655  T
Q  194 aaactcccctgaagataaac 213  Q
    |||| ||| |||||||||||    
T  37795654 aaacacccatgaagataaac 37795635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 34391614 - 34391493
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||     
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacca 34391515  T
Q  192 aaaaactcccctgaagataaac 213  Q
    || ||  |||||||||||||||    
T  34391514 aacaaagcccctgaagataaac 34391493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 42454383 - 42454504
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||| |||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  42454383 aatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacct 42454482  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||   || |||||||||||    
T  42454483 aaaaaaatccttgaagataaac 42454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 48161690 - 48161808
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||||||||| |||||||| ||| |||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T
Q  192 aaaaactcccctgaagataa 211  Q
    || ||  |||||||||||||    
T  48161789 aacaaagcccctgaagataa 48161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 43482331 - 43482232
Alignment:
Q  97 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 196  Q
    |||||||||||||||||||||||||| | |||  ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |||||||||||||    
T  43482331 gcaaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaa 43482233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 11378772 - 11378866
Alignment:
Q  94 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    |||||||||||||||||||| || |||||||||||  |||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 35745481 - 35745735
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||||||| ||| || ||  ||||||||||||||||||||||||||||||| ||||          ||||||||||||||     
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca----------acaccataaccacca 35745570  T
Q  192 aaaaactcccctgaagataa---------acacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccca 282  Q
     | ||  |||||||||||||         |||||||||||||||| |||||| |||| ||| ||| ||| |||  ||||||||| || |||| || ||||    
T  35745571 tacaag-cccctgaagataacccaccaaaacacatcaccacctaagacagacaccttaacagaaa-caaacacactaaacacaacatccacccccaccca 35745668  T
Q  283 tcaccactactcacccccaaagaacacc-ctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||  |||||||||||||||||||||||| |||||||||||||    ||||  |||||||||||||||    
T  35745669 tcgtcactactcacccccaaagaacacctctcaaaataaaacagtcagacttcaacacccaagctga 35745735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 33435337 - 33435278
Alignment:
Q  289 ctactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| |||||||||    
T  33435337 ctactcacccccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctga 33435278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 34390192 - 34390134
Alignment:
Q  287 cactactcacccccaaagaacaccc-tcaaaataaaactcctagaccccaacacccaag 344  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||  |||||||||||    
T  34390192 cactactcatccccaaagaacacccctcaaaataaaactcccagactacaacacccaag 34390134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 2392152 - 2392418
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||| ||          |||||||||||| ||||||| |||||     | |||||| |||||||||||||||   || |||||||||||    
T  2392252 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaaaatagactaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgccc 2392351  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  2392352 atcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctga 2392418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 47236130 - 47235867
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  47236130 aatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatct 47236031  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||| ||||||||          ||||||||||||||||||||   ||| | ||||||||||||||||||||||   || |||||||| ||    
T  47236030 aaaaacacccctggagataaacccaccaaaatacatcaccacctaaaacaga---cttaaaaaaaaacaagcactgtaaacacggtatccaccaccgtcc 47235934  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47235933 atcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctga 47235867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 2393915 - 2394182
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagact-ccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcc 280  Q
    |||||| |||||||| ||          |||||||||||| ||||||| |||||      | |||||| |||||||||||||||   || ||||||||||    
T  2394015 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaaaatagactaaaaaaaaaaaaaaaaagcactgtaaacacggtatccaccaccgcc 2394114  T
Q  281 catcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||  |||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  2394115 catcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctga 2394182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 19176938 - 19176673
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||| || |||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacct 19176839  T
Q  192 aaaaactcccctgaaga----------taaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||  ||||||||||           |||||||| |||||||||||||||||||   | ||||||||||||| |||||||||  || |||||||  ||    
T  19176838 aaaaatacccctgaagacaaacccaccaaaacacataaccacctaaaacagactcc-aaaaaaaaaacaagcacagtaaacacagtatccaccaccatcc 19176740  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  ||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||    
T  19176739 atcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctga 19176673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 104 - 348
Target Start/End: Complemental strand, 43012796 - 43012544
Alignment:
Q  104 ttattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccct 203  Q
    |||||||| |||||||  |||||||  |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||    
T  43012796 ttattaaatgtcatcct-gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcct 43012698  T
Q  204 gaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactact 293  Q
    ||||| ||||          ||||||||| |||||||||||||||||||||||| |||||| |||||||||   || |||| ||| ||||| ||||||||    
T  43012697 gaagaaaaacccaccaaaagacatcaccatctaaaacagactccttcacaaaaa-caagcattgtaaacacggtatccacccccgtccatcgccactact 43012599  T
Q  294 cacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43012598 cacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctga 43012544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 92 - 346
Target Start/End: Complemental strand, 45164285 - 45164026
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||| | ||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    ||||||  ||||| ||||          |||||||||||||||||||| |||||||     || ||||||||| |||||||||   ||||| ||||||||    
T  45164185 aaaaac-accctggagataaacccaccaaaacacatcaccacctaaaatagactcc----aaagaaacaagcattgtaaacacggtattcatcaccgccc 45164091  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagct 346  Q
    |||  ||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  45164090 atcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagct 45164026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 53248332 - 53248069
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||   |||||||||||||| ||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatct 53248233  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    ||||||  ||||||||||          ||||||||||||||||||||||||||||     ||||||||||||||||||||||   |  |||||||||||    
T  53248232 aaaaacaaccctgaagataaccccacaaaaacacatcaccacctaaaacagactcc----aaaaaaacaagcactgtaaacacggtaaccaccaccgccc 53248137  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaat-aaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||||||||| |||||||| |||||||  |||||||||||||||| ||||    
T  53248136 atcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactga 53248069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 34475407 - 34475666
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacct 34475506  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    || ||| |||||| ||||          |||||||||||||||||||||||||||     ||||||||||||| |||||||||   || |||||||||||    
T  34475507 aagaacacccctggagataaactcaccaaaacacatcaccacctaaaacagactc-----caaaaaacaagcaatgtaaacacggtatccaccaccgccc 34475601  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||| |||  |||||||  | ||||||||||| |||||||    
T  34475602 atcgtcactactcacccacaaagaacacccttaaa--aaaactctcataccccaacacctaagctga 34475666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 345
Target Start/End: Original strand, 9583710 - 9583963
Alignment:
Q  100 aatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactc 199  Q
    |||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatac 9583809  T
Q  200 ccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccac 289  Q
    || |||| ||          ||||||||||||||  |||  ||||||||||| ||||||||||||| |||||||| | || |||||||||| |||  |||    
T  9583810 ccttgaaaataaacccaccaaaacacatcaccacaaaaattagactccttca-aaaaaacaagcaccgtaaacacgatatccaccaccgcctatcgtcac 9583908  T
Q  290 tactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagc 345  Q
    |||||| || ||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  9583909 tactca-ccgcaaagaacatcctcaaaataaaactcccagaccccaaaacccaagc 9583963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 348
Target Start/End: Original strand, 40023224 - 40023485
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 197  Q
    ||||||||||||||| |||||||||||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||     
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaa 40023323  T
Q  198 tcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcacc 287  Q
     |||||||||||          |||||||||||||||||| |||||| |||| ||| |||  || ||||||||||||   || ||| |||  |||||  |    
T  40023324 gcccctgaagataaacccatcaaaacacatcaccacctaagacagacaccttaacagaaacaaaacactgtaaacacggtatccacaaccatccatcgtc 40023423  T
Q  288 actactcacccccaaagaac-accctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||| ||| |||||||  |||||||||||||||||| ||||  |||||||| ||||||    
T  40023424 actactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacaccctagctga 40023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 21343779 - 21343678
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T
Q  192 aa 193  Q
    ||    
T  21343679 aa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 23327997 - 23328263
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||  ||||| |||| ||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  23327997 aatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacca 23328096  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    || ||  ||| ||| |||||||          | |||||||||||| || |||  ||| || | |||||| |||||||| ||||| || ||| ||| |||    
T  23328097 aacaaagcccttgaggataaacccacgaaaatatatcaccacctaagacggacctcttaac-agaaacaaacactgtaagcacaatatccacaaccaccc 23328195  T
Q  282 atcaccactactcacccccaaagaacacc-ctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||||||||||||||| |||||||||||||||| ||||  |||||||||||||||    
T  23328196 atcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctga 23328263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 114 - 348
Target Start/End: Original strand, 30352110 - 30352351
Alignment:
Q  114 tcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat---- 209  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||        
T  30352110 tcattcccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagc 30352209  T
Q  210 ------aaacacatcaccac--ctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcaccccca 301  Q
          ||||||||||||||  |  ||| |||   ||  | |||||||||| |||||||||||   || ||||||| ||||||  ||||||||| || ||    
T  30352210 ccaccaaaacacatcaccaccacctaaagaga---ctaaaaaaaaaacaagtactgtaaacacggtatccaccaccacccatcgtcactactcatccaca 30352306  T
Q  302 aagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||||    
T  30352307 aagaacaccct--aaaaaaaactccgagaccccaacacccaagctga 30352351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 31483312 - 31483191
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||  ||||||| ||||||  |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31483312 aatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 31483213  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| |||||| ||||||||    
T  31483212 aaaaacacccctggagataaac 31483191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 50305223 - 50305344
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| ||| ||||||||||  |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |     
T  50305223 aatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataaccatca 50305322  T
Q  192 aaaaactcccctgaagataaac 213  Q
    || ||  |||||||||||||||    
T  50305323 aataaagcccctgaagataaac 50305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 348
Target Start/End: Complemental strand, 17551382 - 17551121
Alignment:
Q  99 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaact 198  Q
    |||||||||||||||| ||||| ||||||   | |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||     
T  17551382 aaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaaaaca 17551283  T
Q  199 cccctgaaga----------taaacacatcaccacctaaaacagact--ccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcac 286  Q
    || ||||| |           |||||||||||||||||||| |||||       | |||||||||||| |  |||||    |  ||||||||||||||      
T  17551282 cctctgaaaaaaaacccaccaaaacacatcaccacctaaaagagactaaaaaaaaaaaaaaacaagcattacaaacaaggtaaccaccaccgcccatcgt 17551183  T
Q  287 cactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  17551182 cactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactga 17551121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 311
Target Start/End: Complemental strand, 45399217 - 45399002
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| |||| ||| |||||   ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  45399217 aatcagcaaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacca 45399118  T
Q  192 aaaaactcccctgaagataaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccacta 291  Q
    | | |  |||    |   |||||||||||||||||| || ||| |||| ||| |||  || |||||||||||||| || ||| | |  |||||  |||||    
T  45399117 agataaaccc----accaaaacacatcaccacctaagacggacaccttaacagaaacaaaacactgtaaacacaatatccacaatcatccatcgtcacta 45399022  T
Q  292 ctcacccccaaagaacaccc 311  Q
    ||||||||||| ||||||||    
T  45399021 ctcacccccaacgaacaccc 45399002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 20612054 - 20611952
Alignment:
Q  245 aaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
    |||||||||||||||||||||  || ||||| ||||||||  |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  20612054 aaaacaagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctaga-cccaacacccaag 20611956  T
Q  345 ctga 348  Q
    ||||    
T  20611955 ctga 20611952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 37158735 - 37158618
Alignment:
Q  94 tcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatat-agacggt-acaccataaccacct 191  Q
    |||||||||||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| | | ||| |||| ||||||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactataaccacct 37158637  T
Q  192 aaaaactcccctgaagata 210  Q
    |||||| ||||||||||||    
T  37158636 aaaaacacccctgaagata 37158618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 4463734 - 4463831
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    ||||||||||||||||||||||||| |||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 25506719 - 25506814
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    ||||| ||||||||||||||| |||||||||||||||  ||| |||  || |||||| ||||||||||||||||||||||||||||||||||||||    
T  25506719 aatcgacaaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 50560070 - 50559978
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    |||||||||||||||||||||| ||||| ||  ||| |||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||    
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 47439347 - 47439284
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaa 155  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 5557011 - 5556918
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 185  Q
    ||||||||||||||||||||||||||  ||| | ||  |||||| || |||||||||||||||||| ||   ||||||||| ||||||||||||    
T  5557011 aatcggcaaatattattaaacgtcatttccgtaggatgtaaggtttgaacgaaacaagatacaaatagttatgcatatagatggtacaccataa 5556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 7105140 - 7105031
Alignment:
Q  217 tcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaaca-ccctcaa 315  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||| |||  || ||||||| ||||||  ||||||||||||| ||  |||| |||| ||    
T  7105140 tcaccacctaaaacagacttcttca-agaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaacaccccttaa 7105042  T
Q  316 aataaaactcc 326  Q
    |||||||||||    
T  7105041 aataaaactcc 7105031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 32010063 - 32010030
Alignment:
Q  214 acatcaccacctaaaacagactccttcacaaaaa 247  Q
    ||||||||||||||||||||||||||||| ||||    
T  32010063 acatcaccacctaaaacagactccttcacgaaaa 32010030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 92 - 344
Target Start/End: Complemental strand, 18593674 - 18593416
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacct 18593575  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||| ||| |||||     ||||||||||||||||||||||   || |||||||||||    
T  18593574 aaaaacacccctgaagataaacccgccaaaacacatcaccacctaacacaaactcc----aaaaaaacaagcactgtaaacacggtatccaccaccgccc 18593479  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
    |||  |||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||    
T  18593478 atcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaag 18593416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 7161663 - 7161928
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| ||||||||||| ||||||||||| |||  |||||||||||||||||||||| |||||    
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacct 7161762  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||| ||||||          ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |  | ||||||| |||    
T  7161763 aaaaacacccctgaatataaacccaccaaaacacatcactacctaaaacagactccttcacaaaa-acaagcactgtaaacacgatttccaccaccaccc 7161861  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    | |  |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  7161862 aacgtcactactcacccccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctga 7161928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 92 - 338
Target Start/End: Complemental strand, 29087903 - 29087659
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29087903 aatcggaaaatattattaaacgtcatccctgcaag-------gtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 29087811  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    ||||||  ||||||||||          |||||||||| |||||||||||||||||     ||||||||||||||||||||||   ||||||||||||||    
T  29087810 aaaaacaaccctgaagataaacccaccaaaacacatcagcacctaaaacagactcc----aaaaaaacaagcactgtaaacacggtattcaccaccgccc 29087715  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaaca 338  Q
    |||  ||||||||||||| |||||| |||||||||||||| |||| |||||||||||    
T  29087714 atcgtcactactcacccctaaagaa-accctcaaaataaagctcccagaccccaaca 29087659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 34378531 - 34378267
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| |||||||||||||||| |||| |||||||||  |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  34378531 aatcgacaaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatct 34378432  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||||||| |||     | |||||||||||| |||||||||   || |||||||| ||    
T  34378431 aaaaacacccctgaagataaacccacaaaaacacatcaccacctaaaacaaact-aaaaaaaaaaaacaagca-tgtaaacacggtatccaccaccgtcc 34378334  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  34378333 atcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctga 34378267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 698799 - 698678
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||| |||| | ||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  698799 aatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacct 698700  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| ||| |||||||||||    
T  698699 aaaaacacccttgaagataaac 698678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 7453020 - 7452915
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||| ||||||  |||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 7452921  T
Q  192 aaaaac 197  Q
    ||||||    
T  7452920 aaaaac 7452915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 5656749 - 5656862
Alignment:
Q  99 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaact 198  Q
    ||||||||||||||| |||| |||||||||  |||||||| |||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||     
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaaca 5656848  T
Q  199 cccctgaagataaa 212  Q
    | ||| ||||||||    
T  5656849 caccttaagataaa 5656862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 18313303 - 18313393
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacacca 182  Q
    |||||| ||||||||||||||||||| || | |||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 18255099 - 18255192
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 185  Q
    |||||||||||||| |||||||| ||||||| ||||   | ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  18255099 aatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 698591 - 698530
Alignment:
Q  287 cactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||    
T  698591 cactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctga 698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  143 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 7195078 - 7195113
Alignment:
Q  212 acacatcaccacctaaaacagactccttcacaaaaa 247  Q
    |||| |||||||||||||||||||||||||||||||    
T  7195078 acacgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 30097636 - 30097593
Alignment:
Q  212 acacatcaccacctaaaacagactccttcacaaaaaacaagcact 256  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||    
T  30097636 acacgtcaccacctaaaacagactccttcac-gaaaacaagcact 30097593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 31207011 - 31207274
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| | |||||||||          |||||||||||||||||||||||||||    | |||||| ||||||||||||||||  || ||||| |||||    
T  31207111 aaaaacactcctgaagataaactcaccaaaacacatcaccacctaaaacagactc---aaaaaaaaaaaagcactgtaaacacagtatccaccatcgccc 31207207  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||    
T  31207208 atcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctga 31207274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 92 - 345
Target Start/End: Complemental strand, 20138858 - 20138598
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| ||| || ||||          ||||||||||||||||||||||||||||     ||||| ||||||||||||||||   || |||||||| ||    
T  20138758 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc----aaaaaatcaagcactgtaaacacggtatccaccaccgtcc 20138663  T
Q  282 atcaccactactcacccccaaagaacaccctc-aaaataaaactcctagaccccaacacccaagc 345  Q
    |||  |||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  20138662 atcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagc 20138598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 24995044 - 24995307
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||| |||| |||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T
Q  192 aaaaactcccctgaagataaacaca----------tcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| ||||||||||||||| ||          |||||||||||||||  ||||     |||||||||||| |||||||||   || |||||||||||    
T  24995144 aaaaacacccctgaagataaacccaccaaaacatgtcaccacctaaaacaatctcc----aaaaaaacaagcattgtaaacacggtatccaccaccgccc 24995239  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctaga-ccccaacacccaagctga 348  Q
    |||  |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24995240 atcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctga 24995307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 12897925 - 12898187
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||||||| |||||     ||||||||| |  || |||||   ||| ||| ||||  |    
T  12898025 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc----aaaaaaacaatccatgcaaacatggaatccacaaccgttc 12898120  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  12898121 atcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctga 12898187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 348
Target Start/End: Original strand, 37986508 - 37986770
Alignment:
Q  96 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 195  Q
    |||||||||||||||| ||||||||||||||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaa 37986607  T
Q  196 actcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatca 285  Q
    || ||||| |||||          |||||||||||||||||||||| |||     | |||||||||||| |||||||||   ||  |||||| ||||||     
T  37986608 acacccctaaagataaacccattaaaacacatcaccacctaaaacaaactaaaaaaaaaaaaacaagcattgtaaacacggtatctaccaccacccatcg 37986707  T
Q  286 ccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
     || ||||||||| |||||||||||||| |||||||||||| |||||  ||||||||||||||    
T  37986708 tcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctga 37986770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 9519938 - 9519668
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| |||||||||||||||  ||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  9519938 aatcgacaaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactc---cttcacaaaaaacaagcactgtaaacacaaaattcaccaccg 278  Q
    |||||| ||||||| |||          |||||| |||||||||||||||  |||       | |||||| || ||||||||||||   || ||||||||    
T  9519838 aaaaacacccctgatgataaacccaccaaaacacgtcaccacctaaaacaacctcaaaaaaaaaaaaaaaaaatcactgtaaacacggtatccaccaccg 9519739  T
Q  279 cccatcaccactactcacccccaaagaacaccctcaaaataaaactcctaga-ccccaacacccaagctga 348  Q
    ||||||  |||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  9519738 cccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctga 9519668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 32065934 - 32066207
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| |||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacct 32066032  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgta------------aacacaaaat 269  Q
    |||||| |||||||||||          |||||||||||||||||||||| |||||     ||||||| | |||||||            |||||   ||    
T  32066033 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc----aaaaaaaccaacactgtatccaccacaaccaacactgtat 32066128  T
Q  270 tcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
     ||||||||||||||  |||||||||| | |||||||||||||| |||||||||||  |||||||||||||||||||||    
T  32066129 ccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctga 32066207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 15821026 - 15821292
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||     
T  15821026 aatcagcaaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacca 15821124  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    || ||  |||||||||||          |||||||||||||||||| |||||| |||| ||| |||  || ||  ||||||||||||| ||| ||| | |    
T  15821125 aataaaacccctgaagataaaaccaccaaaacacatcaccacctaagacagacaccttaacagaaacaaaacaaggtaaacacaaaatccacaaccactc 15821224  T
Q  282 atcaccactactcacccccaaagaacac-cctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||| ||||||||||| || ||||||||| ||||||||||||||||| ||||  ||||| || ||||||    
T  15821225 atcgccactactcactccaaaagaacactcctcaaaataaaactcccagacttcaacatccgagctga 15821292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 326
Target Start/End: Original strand, 16457128 - 16457365
Alignment:
Q  96 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 195  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16457128 ggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaa 16457227  T
Q  196 actcccctgaagat----------aaacacatcaccacct-aaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatc 284  Q
    | | || ||| |||          |||||||||||||||| |||| |||   ||  | ||||||||||||||||||||||   || |||||||| |||||    
T  16457228 aat-ccttgaggataatcgcaccaaaacacatcaccacctaaaaaaaga---ctaaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccatc 16457323  T
Q  285 accactactcacccccaaagaacaccctcaaaataaaactcc 326  Q
      ||||||||||||  ||||| |||||| |||||||||||||    
T  16457324 gtcactactcacccataaagaccaccctgaaaataaaactcc 16457365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 22774053 - 22773932
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatct 22773954  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| ||  |||||||||||    
T  22773953 aaaaacaccagtgaagataaac 22773932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 303
Target Start/End: Complemental strand, 36631254 - 36631038
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||| ||| |||||| |||||||  |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          ||||||||||||||||||||||||||||     ||||||||| ||||||||||||   || |||||||||||    
T  36631155 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactcc----aaaaaaacaaacactgtaaacacggtatccaccaccgccc 36631060  T
Q  282 atcaccactactcacccccaaa 303  Q
    |||   ||||||||||||||||    
T  36631059 atcgtaactactcacccccaaa 36631038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 311
Target Start/End: Original strand, 35815896 - 35816121
Alignment:
Q  95 cggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 194  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||     
T  35815896 cggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacccccaaac 35815995  T
Q  195 aactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatc 284  Q
    ||  ||| |||||||          |||| ||||||||| ||| |||||| |||| || | |||||| || ||||||||||  || ||| ||| ||||||    
T  35815996 aaagcccatgaagataaacccaccaaaacccatcaccacttaagacagacaccttaac-agaaacaaacattgtaaacacagtatccacaaccacccatc 35816094  T
Q  285 accactactcacccccaaagaacaccc 311  Q
    | |||||||||||||||||||||||||    
T  35816095 atcactactcacccccaaagaacaccc 35816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 147 - 348
Target Start/End: Original strand, 34388711 - 34388918
Alignment:
Q  147 aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagat----------aaacacatcaccacctaaaacagactc 236  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||          |||||||||||||||||||||| ||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T
Q  237 cttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaa 336  Q
       || |||||  ||||| |||||||||   || |||||||||| |||  |||||||||||| ||||||||||||||||||||||||||  | |||||||    
T  34388811 ---caaaaaaagaaagcaatgtaaacac-gtatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaa 34388906  T
Q  337 cacccaagctga 348  Q
    ||||||||||||    
T  34388907 cacccaagctga 34388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 41893052 - 41893314
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaaga---cataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacca 188  Q
    ||||| |||||||||||||||||| |||||  ||||   || |||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||    
T  41893052 aatcgacaaatattattaaacgtcgtccccataagatgtcacaaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataacca 41893150  T
Q  189 cctaaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccg 278  Q
    ||||||||   ||| || |||          ||||||||||| ||||||||||||||     | |||||||||| |||||||||||   || ||||||||    
T  41893151 cctaaaaaaaaccc-gaggataaatccaccaaaacacatcactacctaaaacagact-----aaaaaaaacaagaactgtaaacacggtatccaccaccg 41893244  T
Q  279 cccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
     |||||  |||||||||||| ||||||||||||| |||||| |||||| ||||| |||||||||||||||    
T  41893245 accatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctga 41893314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 35821685 - 35821583
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 192  Q
    ||||||||||||||||||||| |||| |||||||||  |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccactta 35821587  T
Q  193 aaaa 196  Q
    ||||    
T  35821586 aaaa 35821583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 3584170 - 3584048
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaa-gatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    |||| ||||||||||||||||| ||||||| ||||||   ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3584170 aatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T
Q  191 taaaaactcccctgaagataaac 213  Q
     || ||  ||||| |||||||||    
T  3584070 aaacaaagccccttaagataaac 3584048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 27889239 - 27889157
Alignment:
Q  131 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  27889239 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaac 27889157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 27947897 - 27947815
Alignment:
Q  131 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  27947897 aaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaac 27947815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 13538417 - 13538324
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 185  Q
    |||| ||||||||||||||||| |||| || ||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13538417 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 13686057 - 13686150
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa 185  Q
    |||| ||||||||||||||||| |||| || ||||||  ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||    
T  13686057 aatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 9659534 - 9659474
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagata 152  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 38577441 - 38577522
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca 179  Q
    ||||||||||||||||||||  ||||||||  ||| ||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  38577441 caaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtaca 38577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 35821514 - 35821432
Alignment:
Q  243 aaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaactc 325  Q
    |||||||||||||||||||||||  ||  | |||||||||||| ||||||||| || ||||||||||||| ||||||||||||    
T  35821514 aaaaaacaagcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacacccttaaaataaaactc 35821432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 34866309 - 34866345
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagac 128  Q
    |||||||||||||||||||||||||||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagac 34866345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 10837941 - 10837984
Alignment:
Q  147 aagatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837941 aagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 22773861 - 22773815
Alignment:
Q  271 caccaccgcccatcaccactactcacccccaaagaacaccctcaaaa 317  Q
    |||||| |||||||  |||||||||||| ||||||||||||||||||    
T  22773861 caccactgcccatcgtcactactcacccacaaagaacaccctcaaaa 22773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 17656518 - 17656606
Alignment:
Q  217 tcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaaga 305  Q
    |||||| ||||||||||||||||||  |||||| | ||||| ||| || | || || |||||| |||   |||||||||||||||||||    
T  17656518 tcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctcattgtcactactcacccccaaaga 17656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 8255459 - 8255196
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8255360  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| | |||||||||          |||||||||||||||||||||||||||   || | |||||||||||||||||||||  || ||||||  |||    
T  8255359 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactc---caaataaaacaagcactgtaaacacagtatccaccacatccc 8255263  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  8255262 atcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctga 8255196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 8268877 - 8268614
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8268778  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| | |||||||||          |||||||||||||||||||||||||||   || | |||||||||||||||||||||  || ||||||  |||    
T  8268777 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactc---caaataaaacaagcactgtaaacacagtatccaccacatccc 8268681  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  8268680 atcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctga 8268614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 8705789 - 8706056
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||||  ||||||   ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T
Q  192 aaaaactcccctgaagat------aaacacatcaccacctaaaacagactc-----cttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcc 280  Q
    |||||| ||| |||||||      |||||||||||||||||||| ||||||         | |||||||||||||||||||||||  || |||||| |||    
T  8705889 aaaaacacccttgaagatccacaaaaacacatcaccacctaaaatagactcaaaaaaaaaaaaaaaaacaagcactgtaaacacagtatccaccactgcc 8705988  T
Q  281 catcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    ||||  |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8705989 catcgtcactacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacccaagctga 8706056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 92 - 326
Target Start/End: Complemental strand, 30964869 - 30964628
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| |||||||||||||||  |||||| |||||||  |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  30964869 aatcgacaaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacct 30964770  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| | |||| ||||          |||||||||||||||||||||||||||   || ||||| || |||||||||| || | ||||||||||||||    
T  30964769 aaaaacactcctggagataaacccaccaaaacacatcaccacctaaaacagactc---caaaaaaatcacgcactgtaaatacgatattcaccaccgccc 30964673  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcc 326  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  30964672 atcatcactactcacccacaaagaacaccctcaaaataaaactcc 30964628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 35329439 - 35329318
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 35329340  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||  ||| |||||||||||    
T  35329339 aaaaatacccatgaagataaac 35329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 321
Target Start/End: Complemental strand, 20465005 - 20464786
Alignment:
Q  108 taaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaag 207  Q
    |||||||||||| | |||||   |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaag 20464906  T
Q  208 ataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacc 297  Q
    ||||||          |||||||||||||||||| |   ||||| ||||||||| | ||||||||||   || ||||||||||||||  |||||||||||    
T  20464905 ataaacccaccaacatacatcaccacctaaaacaaa---cttca-aaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcactactcacc 20464810  T
Q  298 cccaaagaacaccctcaaaataaa 321  Q
    |||||| |||||||||||||||||    
T  20464809 cccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 27555579 - 27555701
Alignment:
Q  92 aatcggcaaatattattaaacgtcatcccc-gcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    |||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  191 taaaaactcccctgaagataaac 213  Q
    ||||||| |||||||||||||||    
T  27555679 taaaaacacccctgaagataaac 27555701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 7703118 - 7703018
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T
Q  192 aa 193  Q
    ||    
T  7703019 aa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 92 - 344
Target Start/End: Original strand, 30167212 - 30167472
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgca--tatagacggtacaccataaccac 189  Q
    ||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||   |  |||||||||||||| |||||||     
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccat 30167311  T
Q  190 ctaaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgc 279  Q
    |||||||  || ||||||||||||          |||||||  |||||||||||||||   | ||||| ||||||||||||||||   || |||||||||    
T  30167312 ctaaaaataccactgaagataaacccaccaaaacacatcacatcctaaaacagactcc---aaaaaaatcaagcactgtaaacacggtatccaccaccgc 30167408  T
Q  280 ccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
    | | |  ||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  30167409 caa-cgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaag 30167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 4306136 - 4306033
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacct 4306038  T
Q  192 aaaaa 196  Q
    |||||    
T  4306037 aaaaa 4306033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 46698428 - 46698525
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    |||| |||||||||||||||||||||||  | |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46698428 aatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 49528514 - 49528421
Alignment:
Q  96 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    ||||||||| |||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 2826213 - 2826118
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    |||| |||||||||||||||||||||| | |||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  2826213 aatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 11281375 - 11281493
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccta 192  Q
    |||||||||||||||| ||||||||| || ||||||  ||| ||||||||||||| |||| ||||||||| | |||||||||||| ||||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccaccta 11281474  T
Q  193 aaaactcccctgaagataa 211  Q
    ||||| || ||||||||||    
T  11281475 aaaacacctctgaagataa 11281493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 36689454 - 36689575
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| ||||||||||||||   |||| |||||||||   |||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||| |    
T  36689454 aatcgacaaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccactt 36689553  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| |||||||||||||||    
T  36689554 aaaaacacccctgaagataaac 36689575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 35341006 - 35341097
Alignment:
Q  98 caaatattattaaacgtcatcccc--gcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 187  Q
    ||||||||||||||||||||||||  |||||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35341006 caaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 97 - 346
Target Start/End: Original strand, 31050315 - 31050572
Alignment:
Q  97 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 196  Q
    ||||||||||||||||||| |||||||||||    | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | | |    
T  31050315 gcaaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc-ataca 31050413  T
Q  197 ctcccctgaagat---------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcacc 287  Q
      | |||||||||         |||||||||||||||||| ||  || || |||  | || ||| |||||||||||||| || ||||| |  |||||  |    
T  31050414 agcacctgaagataactcatcaaaacacatcaccacctaagacgaacacc-tcaacagaagcaaacactgtaaacacaacatccaccatcatccatcgtc 31050512  T
Q  288 actactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagct 346  Q
    ||||||||||||||| ||||| |||||||||||||||  | ||||  |||||||||||||    
T  31050513 actactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacccaagct 31050572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 9750198 - 9750116
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 175  Q
    ||||| |||||||||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 52868766 - 52868859
Alignment:
Q  98 caaatattattaaa-cgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 190  Q
    |||||||||||||| |||||||  | |||||| ||||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868766 caaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 96 - 348
Target Start/End: Original strand, 24449584 - 24449842
Alignment:
Q  96 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 195  Q
    |||||||||||||||||| |||||| ||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  24449584 ggcaaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaa 24449682  T
Q  196 actcccctgaagataaacaca----------tcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatca 285  Q
    || |||||  |||||||||||          ||||||||||||  |||||||   | ||||||||||||||||||||||   || ||||||||||||||     
T  24449683 acacccctagagataaacacaccaaaacacatcaccacctaaagtagactcc---aaaaaaaacaagcactgtaaacacggtatccaccaccgcccatcg 24449779  T
Q  286 ccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
     |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24449780 tcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctga 24449842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 41920889 - 41920626
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||| |||| |||||||||||||||||| |||||||||    
T  41920889 aatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacct 41920790  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| ||| |||||||||||          ||| |||||||||||||| ||||    | |||||||||||| |||||||||   |||||||||||||     
T  41920789 aaaaacacccgtgaagataaaccaaccaaaatacaccaccacctaaaacaaactc---aaaaaaaaacaagcaatgtaaacacggtattcaccaccgcct 41920693  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  41920692 atcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctga 41920626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 30685573 - 30685797
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||||||||||||   ||  ||||||||||| |||||||||   || |||||||||||    
T  30685673 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactc---caacaaaaacaagcaatgtaaacacggtatccaccaccgccc 30685769  T
Q  282 atcaccactactcacccccaaagaacac 309  Q
    |||  |||||| ||||| ||||||||||    
T  30685770 atcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 5459587 - 5459330
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||||||||     ||||||| ||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5459587 aatcagcaaatattattaaacg-----cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacct 5459493  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||  |||||||||||          ||||||||||| || ||||||| |||||     ||||||||| ||||||||||||   || |||||||||||    
T  5459492 aaaaatacccctgaagataaactcaccaaaacacatcactacttaaaacaaactcc----aaaaaaacaatcactgtaaacacggtatccaccaccgccc 5459397  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||    
T  5459396 atcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctga 5459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 92 - 348
Target Start/End: Original strand, 5389077 - 5389333
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| ||||||||||||||| |||||||     ||  ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacct 5389171  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||  ||||||||          |||||||||||||||||| |||||    |||||||||||||| ||||||||   || |||||||||||    
T  5389172 aaaaacacccctagagataaaccaaccaaaacacatcaccacctaaaacaaactcc----caaaaaacaagcaccgtaaacacggtatccaccaccgccc 5389267  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  ||||||||||   ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  5389268 atcgtcactactcacttacaa-gaacaccctcaaaataaaactcccagaccccaacacccaagctga 5389333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 348
Target Start/End: Original strand, 46692519 - 46692731
Alignment:
Q  143 aaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa-ctcccctgaagataaac----------acatcaccacctaaaaca 231  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||          ||||||||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaaca 46692618  T
Q  232 gactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaataaaactcctagac 331  Q
     |||||     |||||||||||||||||||||| | ||  |||||||||||||  |||||||||||| |||||||||||||| |||||||||| | ||||    
T  46692619 aactcc----aaaaaaacaagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagac 46692714  T
Q  332 cccaacacccaagctga 348  Q
    |||||||||||||||||    
T  46692715 cccaacacccaagctga 46692731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 326
Target Start/End: Original strand, 46814121 - 46814358
Alignment:
Q  99 aaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaact 198  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||      
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaag 46814220  T
Q  199 cccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcacca 288  Q
    |||||||||||          |||||||||||||||||| |||||| |||| || | |||||| | |||||||||||  || ||| |||| |||||  ||    
T  46814221 cccctgaagataaacctaccaaaacacatcaccacctaagacagacaccttaac-agaaacaaaccctgtaaacacagtatccacaaccgtccatcgtca 46814319  T
Q  289 ctactcacccccaaagaaca-ccctcaaaataaaactcc 326  Q
    ||||||||| ||||| |||| ||||| ||||||||||||    
T  46814320 ctactcacctccaaataacacccctcgaaataaaactcc 46814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 31584689 - 31584809
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||  ||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31584689 aatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 31584787  T
Q  192 aaaaactcccctgaagataaac 213  Q
    |||||| |||||||||||||||    
T  31584788 aaaaacacccctgaagataaac 31584809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 303
Target Start/End: Original strand, 24684142 - 24684358
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||| | |||||||| ||||||   |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  24684142 aatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacct 24684240  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||          |||||||||||||||||||||| |||||     ||||||||| | |||||||||| | || |||||||||||    
T  24684241 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc----aaaaaaacaaactctgtaaacacgatatccaccaccgccc 24684336  T
Q  282 atcaccactactcacccccaaa 303  Q
    |||  ||||||||| |||||||    
T  24684337 atcgtcactactcaaccccaaa 24684358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 6804969 - 6804866
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| |||||||||||||||  |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T
Q  192 aaaaa 196  Q
    |||||    
T  6804870 aaaaa 6804866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 7002619 - 7002515
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccactt 7002520  T
Q  192 aaaaa 196  Q
    |||||    
T  7002519 aaaaa 7002515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 40216155 - 40216260
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||||||||| ||||||||   || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T
Q  192 aaaaac 197  Q
    ||||||    
T  40216255 aaaaac 40216260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    |||||||||||||||||||||||||||||| |||||   ||||||||||| |||| | |||||||||||| |||||||||||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 24659351 - 24659241
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24659351 aatcagcaaatattattaaacgtcatccccgcaagacg-----------cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacca 24659263  T
Q  192 aaaaactcccctgaagataaac 213  Q
    || ||  |||||||||||||||    
T  24659262 aacaaagcccctgaagataaac 24659241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 348
Target Start/End: Original strand, 27031496 - 27031753
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 197  Q
    |||||||||||||||||||||| ||||||||  ||| |||||||| ||||| ||| ||||||||||||||||| |||||||||||||||| ||  | ||     
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacccccatacaaa 27031595  T
Q  198 tcccctgaagat--------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccac 289  Q
     ||| |||||||        |||||||||||||||||| || ||| |||| || | |||||| | |||||||||||  || ||  || ||| |||  |||    
T  27031596 gcccttgaagataacccccaaaacacatcaccacctaagacggacaccttaac-agaaacaaaccctgtaaacacagtatccataacggcctatcgtcac 27031694  T
Q  290 tactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||| ||||| |||||| |||||||||||||||||| ||||  ||||| |||| ||||    
T  27031695 tactca-ccccagagaacacccctcaaaataaaactcccagacttcaacatccaaactga 27031753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 31585610 - 31585670
Alignment:
Q  287 cactactcacccccaaagaacaccctcaaaataaaactcctaga-ccccaacacccaagct 346  Q
    |||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  31585610 cactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagct 31585670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 6804814 - 6804739
Alignment:
Q  243 aaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacaccctcaaaat 318  Q
    ||||||||||||||||||| |||  || ||||||||||||||  |||| ||||||| ||||||||||||| |||||    
T  6804814 aaaaaacaagcactgtaaatacagtatccaccaccgcccatcgtcactcctcacccacaaagaacaccctgaaaat 6804739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 7857891 - 7857821
Alignment:
Q  279 cccatcaccactactcacccccaaagaaca-ccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||| ||||  |||||||||| ||||    
T  7857891 cccatcgccactactcacccccatagaacacccctcaaaataaaactcccagacttcaacacccaaactga 7857821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 32882668 - 32882583
Alignment:
Q  214 acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcaccccc 300  Q
    |||||||| |||||||| ||||||||||| |||| | |||||||||||||| | || || |||| ||||||  ||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcacgaaaa-cgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 6764232 - 6764280
Alignment:
Q  287 cactactcacccccaaagaacaccctcaaaataaaactcctagacccca 335  Q
    |||||||||||| ||||||||| ||| ||||||||||||| ||||||||    
T  6764232 cactactcacccacaaagaacatcctgaaaataaaactcccagacccca 6764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 24659158 - 24659113
Alignment:
Q  287 cactactcacccccaaagaaca-ccctcaaaataaaactcctagac 331  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||    
T  24659158 cactactcacccccaaataacacccctcaaaataaaactcccagac 24659113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 98 - 348
Target Start/End: Complemental strand, 6131 - 5875
Alignment:
Q  98 caaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 197  Q
    |||||||||||||||||||||||||||||||  ||| |||| |||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaac 6032  T
Q  198 tcccctgaagat-----------aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcac 286  Q
     || ||||||||           |||||||||||||||||||| |||   ||||| ||||||||||||| |||||||    || ||||||| |||||||     
T  6031 acctctgaagataaaccccacaaaaacacatcaccacctaaaa-aga---cttca-aaaaaacaagcaccgtaaacatggtatccaccacctcccatcat 5937  T
Q  287 cactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  5936 cactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctga 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 10542262 - 10542001
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||| |||||||||||| || |||||| ||||||   ||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10542262 aatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacct 10542164  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgccc 281  Q
    |||||| |||||||||||||||          ||| |||||||||||||| |||||     |||||||||||||| |||| ||   || |||||||||||    
T  10542163 aaaaacacccctgaagataaacccatcaaattacaccaccacctaaaacaaactcc----aaaaaaacaagcactttaaatacggtatccaccaccgccc 10542068  T
Q  282 atcaccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaagctga 348  Q
    |||  |||||||||||| ||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  10542067 atcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctga 10542001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 344
Target Start/End: Complemental strand, 3117922 - 3117666
Alignment:
Q  96 ggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 195  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3117922 ggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaa 3117823  T
Q  196 actcccctgaagataaa----------cacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatca 285  Q
    || || |  ||||||||          ||||||||||||||||||| |||     | ||||||||||||||||||||||   |  ||||||||| ||||     
T  3117822 acacctccaaagataaacctaccaaaccacatcaccacctaaaacaaact--aaaaaaaaaaacaagcactgtaaacacggtaaccaccaccgctcatcg 3117725  T
Q  286 ccactactcacccccaaagaacaccctcaaaataaaactcctagaccccaacacccaag 344  Q
     | ||||| |||| |||||||||||||  |||||||||||| |||||||||||||||||    
T  3117724 tctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaag 3117666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 3254389 - 3254211
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T
Q  192 aaaaactcccctgaagataaac----------acatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacac 264  Q
    |||||| |||||||| ||||||          ||||||||||||||||||||||||     ||||||||||||| ||||||||    
T  3254289 aaaaacacccctgaaaataaacccaccaaaatacatcaccacctaaaacagactcc----aaaaaaacaagcaccgtaaacac 3254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 14663384 - 14663249
Alignment:
Q  210 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacac 309  Q
    ||||||||||||||||||||||||||||   | ||| || ||||||||||||||||| || ||||||||||||||  |||||||||||| |||||||||     
T  14663384 aaacacatcaccacctaaaacagactccaaaaaaaacaaaaagcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacat 14663285  T
Q  310 cctcaaaataaaactcctagaccccaacacccaagc 345  Q
    ||||||||||||||||| | ||||||||| ||||||    
T  14663284 cctcaaaataaaactcccaaaccccaacatccaagc 14663249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 15944431 - 15944274
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||||||||||||||||||||| |||||| | |||||  |||||||||||  || ||||||||||||||| ||||||||||||||||||||||| |||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacct 15944332  T
Q  192 aaaaactcccctgaagat----------aaacacatcaccacctaaaacagactcctt 239  Q
    |||||  |||||||| ||          ||||||||||||||||||||||||||||||    
T  15944331 aaaaatacccctgaatataaacccaccaaaacacatcaccacctaaaacagactcctt 15944274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  135 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 15132489 - 15132573
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggt 176  Q
    |||| ||||||||||||||||| ||||  |||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  15132489 aatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 14663480 - 14663414
Alignment:
Q  97 gcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgc 165  Q
    ||||||||||||||||||||| || |||||||  |||||||||||| ||||||||||||||| ||||||    
T  14663480 gcaaatattattaaacgtcat-cctgcaagacgaaaggtatggacg-aacaagatacaaatgctgccgc 14663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 15120380 - 15120416
Alignment:
Q  212 acacatcaccacctaaaacagactccttcacaaaaaa 248  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15120380 acacatcaccacctaaaacagactcattcacaaaaaa 15120416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 16598939 - 16598967
Alignment:
Q  101 atattattaaacgtcatccccgcaagaca 129  Q
    |||||||||||||||||||||||||||||    
T  16598939 atattattaaacgtcatccccgcaagaca 16598967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 48767 - 48648
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 191  Q
    |||| |||||||||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48767 aatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T
Q  192 aaaaactcccctgaagataa 211  Q
    |||||| ||| | |||||||    
T  48667 aaaaacacccttaaagataa 48648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 19349 - 19245
Alignment:
Q  93 atcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataa-ccacct 191  Q
    ||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacct 19250  T
Q  192 aaaaa 196  Q
    |||||    
T  19249 aaaaa 19245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 2345 - 2443
Alignment:
Q  115 catccccgcaagacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaactcccctgaagataaac 213  Q
    ||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaac 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 348
Target Start/End: Original strand, 35554 - 35684
Alignment:
Q  210 aaacacatcaccacctaaaacagactccttcacaaaaaacaagcactgtaaacacaaaattcaccaccgcccatcaccactactcacccccaaagaacac 309  Q
    |||||||||| |||||||||||||||||     |||||||||||||||||||||||  || |||||| |||||||  ||| |||||||  | |||||||     
T  35554 aaacacatcatcacctaaaacagactcc-----aaaaaacaagcactgtaaacacagtatccaccactgcccatcgtcac-actcacctgctaagaaca- 35646  T
Q  310 cctcaaaataaaactcctagaccccaacacccaagctga 348  Q
     ||| ||| |||||||| | |||||||||||||||||||    
T  35647 -ctctaaaaaaaactcccacaccccaacacccaagctga 35684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 35473 - 35526
Alignment:
Q  92 aatcggcaaatattattaaacgtcatccccgcaagacataaggtatggacgaaa 145  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  35473 aatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University