View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18003_high_34 (Length: 366)
Name: NF18003_high_34
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18003_high_34 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 26693643 - 26693978
Alignment:
| Q |
15 |
ggcaagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaac |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26693643 |
ggcaagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaac |
26693742 |
T |
|
| Q |
115 |
cggaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26693743 |
cggaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaa |
26693842 |
T |
|
| Q |
215 |
acagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcaccaagcaaatttcacctataaacaatgtaagcagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26693843 |
acagaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcaccaagcaaatttcacctataaacaatgtaagcagt |
26693942 |
T |
|
| Q |
315 |
tctgcttgcgaatgtgtgaatgcatagccttccaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
26693943 |
tctgcttgcgaatgtgtgaatgcatagccttccaat |
26693978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 26676597 - 26676264
Alignment:
| Q |
17 |
caagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaaccg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||| ||||||| ||| | |
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|
| T |
26676597 |
caagagaagtggtcgatttcagggcaattccaccaacaacctttcaaaatacatggaatttgtggacctaatagtgtttgcattaataatccaagaactg |
26676498 |
T |
|
| Q |
117 |
gaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaaac |
216 |
Q |
| |
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| ||||||||| ||||| |||| ||||||| ||||||| |||||||| |||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
26676497 |
gtagaaagtgtttgtgtgttcccggttatagcaggatcgataatcaaaattggtctcaggggtgcaaaccaaacttccaactttcatgcaataacaaaac |
26676398 |
T |
|
| Q |
217 |
agaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcaccaagcaaatttcacctataaacaatgtaagcagttc |
316 |
Q |
| |
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| | | | ||||| ||||||||| |||||||||||||| ||||||||||| |||||| | | ||||||||| ||| ||||||||||||||||| ||| |
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| T |
26676397 |
aaagttagagacttacttccaacgtttaccccatgttgagttttatggatatgattatcagttcaaagcaaattacacttataaacaatgtaagcatttc |
26676298 |
T |
|
| Q |
317 |
tgcttgcgaatgtgtgaatgcatagccttccaat |
350 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| |
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|
| T |
26676297 |
tgcttacgaatgtgccaatgtgtagccttccaat |
26676264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 26689493 - 26689824
Alignment:
| Q |
17 |
caagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaaccg |
116 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||| ||| || | |
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|
| T |
26689493 |
caagagaagtggtcaatttcaggacaattccaccaacaacctttcaaaatacatggaatttgtggacctaatagcttttgcattaacaatgcaagaattg |
26689592 |
T |
|
| Q |
117 |
gaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaaac |
216 |
Q |
| |
|
| || || ||| ||||| ||||||||| || |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
26689593 |
gtaggaaatgtttgtgtgttcctggttttaggaggatccataatcaagattggtcacaagggtgcaaaccaagcttccaactttcatgcaacaataaaac |
26689692 |
T |
|
| Q |
217 |
agaatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcaccaagcaaatttcacctataaacaatgtaagcagttc |
316 |
Q |
| |
|
|| | | ||||||| |||||||||||| | | |||| | ||||||||||||||| || |||||||||||| ||| ||||||||||||||||| || |
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|
| T |
26689693 |
cgagttagagactcgtttccaacgcttatcacgtgttcagttttatggatacgatgatgattaccaagcaaattacacttataaacaatgtaagcattta |
26689792 |
T |
|
| Q |
317 |
tgcttgcgaatgtgtgaatgcatagccttcca |
348 |
Q |
| |
|
||| || ||||||| |||||||||||||||| |
|
|
| T |
26689793 |
tgcatgagaatgtgccaatgcatagccttcca |
26689824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 333
Target Start/End: Complemental strand, 26745112 - 26744898
Alignment:
| Q |
119 |
agaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaaacag |
218 |
Q |
| |
|
||||||||| ||| ||||| ||||||| ||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
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|
| T |
26745112 |
agaaagtgttcgtgccttccaggttatatcaggatcgataatcaagactggttccaagggtgcaaaccaagcttccaactttcatgtgacaacaagacaa |
26745013 |
T |
|
| Q |
219 |
aatcaaagactcgcttccaacgcttaccccatgttgatttttatggatacgattatttgcac-caagcaaatttcacctataaacaatgtaagcagttct |
317 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| | ||||||||||| ||||| | | || | ||||||| |||||||||||||||||||| || | |
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|
| T |
26745012 |
gttcaaatactcgcttccaacacttaccccatgtcaaattttatggatatgatta-tggtacttacgcaaattatacctataaacaatgtaagcatttgt |
26744914 |
T |
|
| Q |
318 |
gcttgcgaatgtgtga |
333 |
Q |
| |
|
|| ||||| ||||||| |
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|
| T |
26744913 |
gcatgcgactgtgtga |
26744898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 26738181 - 26737975
Alignment:
| Q |
15 |
ggcaagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaac |
114 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||||| |||| ||||||||||||||||| || ||| || || | | ||||| || |
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|
| T |
26738181 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccttgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26738082 |
T |
|
| Q |
115 |
cggaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaa |
214 |
Q |
| |
|
|| ||||| ||| ||||||||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| |
|
|
| T |
26738081 |
aggtagaaaatgttcgtgtcttccaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcttgcaataacaag |
26737982 |
T |
|
| Q |
215 |
acagaat |
221 |
Q |
| |
|
||||||| |
|
|
| T |
26737981 |
acagaat |
26737975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 26714945 - 26714739
Alignment:
| Q |
15 |
ggcaagagaagtggttgatttcagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaac |
114 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||| | |||| ||||||||||||||||| || ||| || || | | ||||| || |
|
|
| T |
26714945 |
ggcaagagaagtggttagtgtcagggcaattcgtccaacaaccatgtcaaattcatggaatttgtggacctaacagcacttgcagttatggtccaataaa |
26714846 |
T |
|
| Q |
115 |
cggaagaaagtgtgtgtgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaacaaa |
214 |
Q |
| |
|
|| ||||| ||| |||||||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
26714845 |
aggtagaaaatgttcgtgtcttctaggttatagcataatcaataaccaagattggtctcaagggtgcaaaccaagcttccaattttcatgcaataacaag |
26714746 |
T |
|
| Q |
215 |
acagaat |
221 |
Q |
| |
|
||||||| |
|
|
| T |
26714745 |
acagaat |
26714739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 26699531 - 26699466
Alignment:
| Q |
286 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatt |
351 |
Q |
| |
|
||||| ||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||| |
|
|
| T |
26699531 |
aaattacacctataaacaatgtaagcatttgtgtttgcgattgtgtgaatgcatagccttccaatt |
26699466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 26699775 - 26699601
Alignment:
| Q |
36 |
cagggcaattccaccaacaacctttaaaaatacatggaatttgtggaccgaatagctattccattaacaatccaaaaaccggaagaaagtgtgtgtgtct |
135 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||| ||||||||||| |||||| || || | | |||||| ||| || ||||| ||| |||||| |
|
|
| T |
26699775 |
cagggcaattcctccagcaaccttgtcaaatacatgggatttgtggacctaatagcgcttgcagttatgatccaagaactggtagaaaatgttcgtgtct |
26699676 |
T |
|
| Q |
136 |
tcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaa |
210 |
Q |
| |
|
||| ||||||| || ||||| || || || ||||||||||| || |||||||||||| || |||| |||||||| |
|
|
| T |
26699675 |
tccaggttatagcataatcaacaaccaggactggtctcaaggatgcaaaccaagcttcaaattttcttgcaacaa |
26699601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 26737916 - 26737851
Alignment:
| Q |
286 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatt |
351 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26737916 |
aaattacacctataaacaatgtaagcatatatgcttacaaatgtgtgaatgcatagccttccaatt |
26737851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 26714680 - 26714615
Alignment:
| Q |
286 |
aaatttcacctataaacaatgtaagcagttctgcttgcgaatgtgtgaatgcatagccttccaatt |
351 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||| | |||||||||||||||||| |||||||| |
|
|
| T |
26714680 |
aaattacacctatgaacaatgtaagcatctatgcttacaaatgtgtgaatgcatagctttccaatt |
26714615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 26734834 - 26734755
Alignment:
| Q |
131 |
tgtcttcctggttataacaggatcaataatcaagattggtctcaagggtgtaaaccaagcttccaactttcatgcaacaa |
210 |
Q |
| |
|
|||||||| ||||||| || ||||| || ||||| ||||||||||| || |||||||||||| || |||| |||||||| |
|
|
| T |
26734834 |
tgtcttccaggttatagcataatcaacaaccaagactggtctcaaggatgcaaaccaagcttcgaattttcttgcaacaa |
26734755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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