View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_37 (Length: 356)

Name: NF18003_high_37
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_37
NF18003_high_37
[»] chr8 (10 HSPs)
chr8 (16-342)||(12068583-12068912)
chr8 (49-297)||(12064781-12065027)
chr8 (49-282)||(15972477-15972710)
chr8 (16-169)||(15639192-15639346)
chr8 (16-169)||(15651198-15651352)
chr8 (16-167)||(15627433-15627585)
chr8 (16-169)||(15607674-15607828)
chr8 (17-168)||(15616019-15616175)
chr8 (16-181)||(38816874-38817037)
chr8 (49-164)||(15997002-15997118)
[»] chr1 (1 HSPs)
chr1 (16-342)||(39404265-39404587)
[»] chr2 (2 HSPs)
chr2 (16-85)||(12082317-12082387)
chr2 (147-210)||(12082227-12082288)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 12068583 - 12068912
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcacataaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactatt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12068583 aaaaatgagaatagcattcaaatatagctcacataaatgtataagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactatt 12068682  T
Q  116 ttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtagagttctatactatatactagaa---tctcagcccaaactcacaat 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||     
T  12068683 ttttattcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtagagttgtatactatatactagaaatatctcagcccaaactcacaac 12068782  T
Q  212 cagcagctatatcaaagcaatggaatacatataatagagtaaaacaagtaacctgctaatttgaaacagatatatgcacattattacacggacctatttc 311  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12068783 cagcagctgtatcaaagcaaagaaatacatataatagagtaaaacaagtaacctgctaatttgaaacagatatatgcacattattacacgga-ctatttc 12068881  T
Q  312 tcatcatttcaactcaacgaattcactattt 342  Q
    |||||||||||||||||||||||||||||||    
T  12068882 tcatcatttcaactcaacgaattcactattt 12068912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 49 - 297
Target Start/End: Original strand, 12064781 - 12065027
Alignment:
Q  49 taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactattttta-ttcatgtcagaaaatactaattttgtgt 147  Q
    |||||||| || | |||||||||| | || ||||  ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||       
T  12064781 taaatgtataacagtaaatgaagaaaaaacattgcatcctaaaatattataaagaacaaaaactatttttaattcacgtcagaaaatactatttttgc-- 12064878  T
Q  148 aagtctacactaaaaaatgtagagttctatactatatactagaatctcagcccaaactcacaatcagcagctatatcaaagcaatggaatacatataata 247  Q
     |||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||  |||||||||||  ||||||| ||||||    
T  12064879 -agtcgacactaaaaaatgtatagttgtatactatatactagaatctcaggccaaactcacaagcagcagcagtatcaaagcaacagaatacagataata 12064977  T
Q  248 gagtaaaacaagtaacctgctaatttgaaacagatatatgcacattatta 297  Q
    |||||||||||||||| | ||||||| ||| ||||||||||||| |||||    
T  12064978 gagtaaaacaagtaacattctaatttcaaatagatatatgcacaatatta 12065027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 49 - 282
Target Start/End: Original strand, 15972477 - 15972710
Alignment:
Q  49 taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactattttt-attcatgtcagaaaatactaattttgtgt 147  Q
    |||||||| || |||||||||||| | |||||||||||||||||||||||||| | |||||| ||||||| ||||| ||||||||||| ||||||| |      
T  15972477 taaatgtataacactaaatgaagaaaaaatattgattcctaaaatattataaa-agcaaaaagtatttttgattcacgtcagaaaatattaattttttca 15972575  T
Q  148 aagtctacactaaaaaatgtagagttctatactatatactagaatctcagcccaaactcacaatcagcagctatatcaaagcaatggaatacatataata 247  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||  ||||| | ||| ||    
T  15972576 atgtctacactaaaaaatgtagagttgtatactatatactagaatctcagcccaaactcacaaccagcacctgtatcaaagcaacagaatatagatatta 15972675  T
Q  248 gagtaaaacaagtaacctgctaatttgaaacagat 282  Q
    |||||||||||||||| ||||||||| ||| ||||    
T  15972676 gagtaaaacaagtaacatgctaatttcaaatagat 15972710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 15639346 - 15639192
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||  ||||||||||| | |||||||||||||||| |||||||||||| |||||||||    
T  15639346 aaaaatgagaatagcatccaactatggctcacaataaatgtataactctaaatgaagaaaaaatattgattcctaaa-tattataaagaaaaaaaactat 15639248  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtag 169  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15639247 ttttgattcatgtcagaaaatactaattttgtctaagtctacactaaaaaatgtag 15639192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 15651352 - 15651198
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||  ||||||||||| | |||||||||||||||| |||||||||||| |||||||||    
T  15651352 aaaaatgagaatagcatccaactatggctcacaataaatgtataactctaaatgaagaaaaaatattgattcctaaa-tattataaagaaaaaaaactat 15651254  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtag 169  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15651253 ttttgattcatgtcagaaaatactaattttgtctaagtctacactaaaaaatgtag 15651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 15627585 - 15627433
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||  ||||||||||| | |||||||||||| |||||||||||||||| |||||||||    
T  15627585 aaaaatgagaatagcatccaactatggctcacaataaatgtataactctaaatgaagaaaaaatattgattcc-aaaatattataaagaaaaaaaactat 15627487  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgt 167  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  15627486 ttttgattcatgtcagaaaatactaattttgactaagtctacactaaaaaatgt 15627433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 15607828 - 15607674
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||  ||||||||||| | |||||||||||||||| |||||| ||||| |||||||||    
T  15607828 aaaaatgagaatagcatccaactatggctcacaataaatgtataactctaaatgaagaaaaaatattgattcctaaa-tattatgaagaaaaaaaactat 15607730  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtag 169  Q
    |||| |||||||||||||||| |||||||| | |||||||||||||||||||||||    
T  15607729 ttttgattcatgtcagaaaattctaattttctctaagtctacactaaaaaatgtag 15607674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 15616175 - 15616019
Alignment:
Q  17 aaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaac----aaaaac 111  Q
    |||||||||||||||| ||| |||||||| || |||||||| ||  ||||||||||| | |||||||||||||||| ||||||||||||     ||||||    
T  15616175 aaaatgagaatagcatccaactatggctcgcaataaatgtataactctaaatgaagaaaaaatattgattcctaaa-tattataaagaaagaaaaaaaac 15616077  T
Q  112 tattttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgta 168  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15616076 tatttttgattcatgtcagaaaatactaattttgtctaagtctacactaaaaaatgta 15616019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 38817037 - 38816874
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcac-ataaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||  |||||||||||||| ||||||||| || ||||||| |||| | || ||||||||||||||   ||||||||||||||||| |    
T  38817037 aaaaatgagaatagcacccaaatatggctcacaataaatgtataacactaaatcaagaaaaaacattgattcctaaaa---tataaagaacaaaaactgt 38816941  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtagagttctatacta 181  Q
    |||| |||||  ||| ||||||||||||||||   |||| ||| || ||||||||||||| |||||||    
T  38816940 ttttaattcacatcaaaaaatactaattttgt-ccagtcaacattagaaaatgtagagttgtatacta 38816874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 15997002 - 15997118
Alignment:
Q  49 taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactattttt-attcatgtcagaaaatactaattttgtgt 147  Q
    |||||||| || |||||||||||| | ||| ||||||||||||||||||||||||||| ||  ||||||| ||||| |||||||||||| ||||||||      
T  15997002 taaatgtataacactaaatgaagaaaaaatgttgattcctaaaatattataaagaacataagatatttttgattcaggtcagaaaatacaaattttgtcc 15997101  T
Q  148 aagtctacactaaaaaa 164  Q
    |||||||||||| ||||    
T  15997102 aagtctacactataaaa 15997118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 39404265 - 39404587
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcaca-taaatgtagaagactaaatgaagatataatattgattcctaaaatattataaagaacaaaaactat 114  Q
    ||||||||||||||||| |||| |||||||||| |||||||| || ||||||| |||| | ||||||||||||||||||||   ||||||||||||||||    
T  39404265 aaaaatgagaatagcatccaaa-atggctcacaataaatgtataacactaaatcaagaaaaaatattgattcctaaaatat---aaagaacaaaaactat 39404360  T
Q  115 tttt-attcatgtcagaaaatactaattttgtgtaagtctacactaaaaaatgtagagttctatactatatactagaatctcagcccaaactcacaatca 213  Q
    |||| |||||  |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  39404361 tttttattcacatcagaaaatactaattttttctaagtctacactaaaaaatgtagagttgtatactatatactagaatctcagcccaaactcacaacca 39404460  T
Q  214 gcagctatatcaaagcaatggaatacatataatagagtaaaacaagtaacctgctaatttgaaacagatatatgcacattattacacggacctatttctc 313  Q
    |||||| |||||||| ||  ||||||| |||||||||||||||||||| | |||| |||| ||| ||||||||||||| || |||| |||  ||||||||    
T  39404461 gcagctgtatcaaagtaacagaatacagataatagagtaaaacaagtagcatgcttatttcaaatagatatatgcacaatactacaagga-ttatttctc 39404559  T
Q  314 atcatttcaactcaacgaattcactattt 342  Q
    ||||||||||| |||| || |||||||||    
T  39404560 atcatttcaacacaac-aagtcactattt 39404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 12082387 - 12082317
Alignment:
Q  16 aaaaatgagaatagcattcaaatatggctcac-ataaatgtagaagactaaatgaagatataatattgatt 85  Q
    ||||||||||||||||| ||||||| |||||| ||||||||| |||||||||| | || | ||||||||||    
T  12082387 aaaaatgagaatagcatccaaatatagctcacaataaatgtataagactaaatcaggaaaaaatattgatt 12082317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 12082288 - 12082227
Alignment:
Q  147 taagtctacactaaaaaatgtagagttctatactatatactagaatctcagcccaaactcacaa 210  Q
    |||||||||| || |||||| |||||| |||  | ||||||||||||||||||||||| |||||    
T  12082288 taagtctacattagaaaatggagagttgtat--tgtatactagaatctcagcccaaacccacaa 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University