View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_41 (Length: 337)

Name: NF18003_high_41
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_41
NF18003_high_41
[»] chr6 (1 HSPs)
chr6 (60-333)||(14412085-14412366)
[»] chr2 (3 HSPs)
chr2 (159-333)||(5119478-5119652)
chr2 (197-333)||(5079919-5080055)
chr2 (231-333)||(5101919-5102021)
[»] chr3 (1 HSPs)
chr3 (197-333)||(16886200-16886336)
[»] chr8 (16 HSPs)
chr8 (197-331)||(22900567-22900701)
chr8 (197-323)||(23258373-23258499)
chr8 (197-322)||(24912850-24912975)
chr8 (197-322)||(25647181-25647306)
chr8 (197-312)||(25800447-25800562)
chr8 (197-322)||(25685816-25685941)
chr8 (197-312)||(25341149-25341264)
chr8 (233-322)||(25490402-25490491)
chr8 (197-322)||(25715362-25715487)
chr8 (200-312)||(25570058-25570170)
chr8 (197-312)||(25322825-25322940)
chr8 (197-323)||(25453151-25453277)
chr8 (233-322)||(25695565-25695654)
chr8 (197-312)||(25604806-25604921)
chr8 (200-322)||(24875196-24875318)
chr8 (252-312)||(25475885-25475945)
[»] chr4 (1 HSPs)
chr4 (197-323)||(10324022-10324148)
[»] scaffold0070 (1 HSPs)
scaffold0070 (197-322)||(16810-16935)
[»] scaffold0830 (1 HSPs)
scaffold0830 (233-322)||(4296-4385)
[»] chr5 (1 HSPs)
chr5 (276-310)||(10611947-10611981)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 60 - 333
Target Start/End: Original strand, 14412085 - 14412366
Alignment:
Q  60 tttttgttgctgccaataacaaaacacaagaaaatcatataaatgtgttg-----tagacaattaggcctaaaaa--agtcaatattattgctatttaga 152  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||||     ||||||| ||||||||||||  |||||||||||||||||||||||    
T  14412085 tttttgttgctgccaaaaacaaaacacaagaaaatcatataagtatgttgatggttagacaactaggcctaaaaataagtcaatattattgctatttaga 14412184  T
Q  153 catttagataagatataatgtgacttatttgtgaagaaactata-acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgt 251  Q
    || |  ||||||||||||| ||| |||   ||||| ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14412185 caatccgataagatataatatgatttagaagtgaataaattatttacctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgt 14412284  T
Q  252 ccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacattactaggcttca 333  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  14412285 ccttcatccaagagcttggaaatgccaaaatcactcacatgtgcaatcatagcttcatctagtaacacattactaggcttca 14412366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 5119652 - 5119478
Alignment:
Q  159 gataagatataatgtgacttatttgtgaagaaactataacctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcat 258  Q
    ||||||||||||| |||||||   ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5119652 gataagatataatatgacttagaagtgaagaagttataacctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcat 5119553  T
Q  259 ccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacattactaggcttca 333  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5119552 ccaagagcttggaaatcccaaaatcactaacatgtgcaaccatatcttcatccagcaacacattactaggcttca 5119478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 5079919 - 5080055
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||||||| ||||  ||||||||||||   ||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||    
T  5079919 acctggtgcaacataaccaattgtagctaaagtctgagtatgagctttagattgtccatcatccaagagctttgaaatcccaaaatcactaacatgtgca 5080018  T
Q  297 accatatcttcatccagcaacacattactaggcttca 333  Q
    ||||||| ||||||||| |||||||| ||||||||||    
T  5080019 accatattttcatccagtaacacattgctaggcttca 5080055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 5102021 - 5101919
Alignment:
Q  231 cctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacattactaggct 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||  |||||||||  |||||    
T  5102021 cctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactaacatgtgcaatcatattttcatccaataacacattagcaggct 5101922  T
Q  331 tca 333  Q
    |||    
T  5101921 tca 5101919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 197 - 333
Target Start/End: Complemental strand, 16886336 - 16886200
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||||||||||||||||||||||||| | |||||  |||| || |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  16886336 acctggtgcaacatagccaagagtagctaaagtctcagtatggattttagaatgtccttcatccaagagcttagaaattccaaaatcactgacatgtgca 16886237  T
Q  297 accatatcttcatccagcaacacattactaggcttca 333  Q
    ||||||| |||||| || |||||||||||||||||||    
T  16886236 accatattttcatctagtaacacattactaggcttca 16886200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 22900701 - 22900567
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||| ||||||||||||| |||||||||||||||| ||| |||| ||| ||||||||||| |||||||||    
T  22900701 acctggtgcaagatatccaatagtagccaaagtctctgtatgagttttagattgtccttcatccatgagtttggcaataccaaaatcactaacatgtgca 22900602  T
Q  297 accatatcttcatccagcaacacattactaggctt 331  Q
    ||||||||||| |||||||| ||||||||||||||    
T  22900601 accatatcttcgtccagcaagacattactaggctt 22900567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 23258373 - 23258499
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||||||||||||||||   |||||||||||  |||||||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  23258373 acctggtgcaaggtatccaagagtagctaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgaaataccaaaatcactaacatgtgca 23258472  T
Q  297 accatatcttcatccagcaacacatta 323  Q
    ||||||| |||||||| ||| ||||||    
T  23258473 accatattttcatccaacaagacatta 23258499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 24912975 - 24912850
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||| |||||||||||||  |||||||||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||||    
T  24912975 acctggtgcaaggtatccaacagtagctaaagtctgtgtatgagttttagattgtccttcatccatgagctttgcaataccaaaatcactaacatgtgca 24912876  T
Q  297 accatatcttcatccagcaacacatt 322  Q
    ||||||| |||||||| ||| |||||    
T  24912875 accatattttcatccaacaagacatt 24912850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 25647181 - 25647306
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| ||||||  |||||||||||| |||||||||||| ||| |||||| | ||| ||||||||||| |||||||||    
T  25647181 acctggtgcaagatatccaatagtagccaaagtctgtgtatgagttttagattgtccttcacccatgagcttagcaataccaaaatcactaacatgtgca 25647280  T
Q  297 accatatcttcatccagcaacacatt 322  Q
    ||||||| |||||||| ||| |||||    
T  25647281 accatattttcatccaacaagacatt 25647306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 25800447 - 25800562
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||   |||||||||||| |||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  25800447 acctggtgcaagatatccaacagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaaatcgcttacatgtgca 25800546  T
Q  297 accatatcttcatcca 312  Q
    ||||||| ||||||||    
T  25800547 accatattttcatcca 25800562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 25685816 - 25685941
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||   |||||||||||  |||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  25685816 acctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccaggagcttggcaataccaaaatcgctaacatgtgca 25685915  T
Q  297 accatatcttcatccagcaacacatt 322  Q
    ||||||| |||||||| ||| |||||    
T  25685916 accatattttcatccaacaagacatt 25685941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 25341149 - 25341264
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||| |||||| |||||   |||||||||||| |||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  25341149 acctggtgcaaggtatccaatagtagccaaagtttgtgtatgagttttagattgtccttcatccatgagcttggcaataccaaaatcgcttacatgtgca 25341248  T
Q  297 accatatcttcatcca 312  Q
    ||||||| ||||||||    
T  25341249 accatattttcatcca 25341264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 25490402 - 25490491
Alignment:
Q  233 tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacatt 322  Q
    |||||||||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||||||||||| |||||||| ||| |||||    
T  25490402 tgtatgagttttagattgtccttcatccatgagcttagcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacatt 25490491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 25715362 - 25715487
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||   |||||||||||  |||||||||||||||| |||||| | ||| |||||||| || |||||||||    
T  25715362 acctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagctttgcaataccaaaatcgctaacatgtgca 25715461  T
Q  297 accatatcttcatccagcaacacatt 322  Q
    ||||||| |||||||| ||| |||||    
T  25715462 accatattttcatccaacaagacatt 25715487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 25570058 - 25570170
Alignment:
Q  200 tggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaacc 299  Q
    ||||||||  || |||| |||||||||||||  |||||||||||| ||||| |||||||||| |||||| | ||| ||||||||||| ||| ||||||||    
T  25570058 tggtgcaaggtatccaatagtagctaaagtctgtgtatgagttttagattgaccttcatccatgagcttagcaataccaaaatcactaacacgtgcaacc 25570157  T
Q  300 atatcttcatcca 312  Q
    |||| ||||||||    
T  25570158 atattttcatcca 25570170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 25322825 - 25322940
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||   |||||||||||  |||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  25322825 acctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgca 25322924  T
Q  297 accatatcttcatcca 312  Q
    ||||||| || |||||    
T  25322925 accatatttttatcca 25322940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 25453151 - 25453277
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||| ||||||||||||   ||| | |||||  |||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  25453151 acctggtgcaaggtatccaatagtagctaaagtttgtgtgtaagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgca 25453250  T
Q  297 accatatcttcatccagcaacacatta 323  Q
    ||||||| |||||||| ||| ||||||    
T  25453251 accatattttcatccaacaagacatta 25453277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 25695565 - 25695654
Alignment:
Q  233 tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacatt 322  Q
    |||||||||||| ||||||||||||||||  ||||| | ||| ||||||||||| |||||||||||||||| |||||||| ||| |||||    
T  25695565 tgtatgagttttagattgtccttcatccatcagctttgcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacatt 25695654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 25604806 - 25604921
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    ||||||||||| ||| |||| |||||| |||||   |||||||||||  |||||||||||||||| |||||||| ||| |||||||| || ||||||||     
T  25604806 acctggtgcaagatatccaatagtagccaaagtttgtgtatgagtttgagattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgct 25604905  T
Q  297 accatatcttcatcca 312  Q
    ||||||| || |||||    
T  25604906 accatatttttatcca 25604921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 24875318 - 24875196
Alignment:
Q  200 tggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaacc 299  Q
    ||||||||  || |||| |||||| |||||   |||||||||||  |||||||||||||||| |||||| | ||| |||||||| || ||||||||||||    
T  24875318 tggtgcaaggtatccaatagtagccaaagtttgtgtatgagtttcagattgtccttcatccatgagctttgcaataccaaaatcgctaacatgtgcaacc 24875219  T
Q  300 atatcttcatccagcaacacatt 322  Q
    |||| |||||||| ||| |||||    
T  24875218 atattttcatccaacaagacatt 24875196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 25475885 - 25475945
Alignment:
Q  252 ccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatcca 312  Q
    |||||||| | |||||||| ||| ||||||||||| |||||||||||||||| || |||||    
T  25475885 ccttcatcgatgagcttggcaataccaaaatcactaacatgtgcaaccatatttttatcca 25475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 10324022 - 10324148
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||||||||    
T  10324022 acctggtgcaaggtatccaatagtagctaaagtctgtgtatgagtttttgattgtccttcatccatgagcttggcaataccaaaatcgctaacatgtgca 10324121  T
Q  297 accatatcttcatccagcaacacatta 323  Q
    ||||||| |||||||| ||| ||||||    
T  10324122 accatattttcatccaacaagacatta 10324148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 16935 - 16810
Alignment:
Q  197 acctggtgcaacatagccaagagtagctaaagtccctgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgca 296  Q
    |||||||||||  || |||| |||||||||||||  |||||||||||| ||||| |||||||||| |||||| | ||| ||||||||||| |||||||||    
T  16935 acctggtgcaaggtatccaacagtagctaaagtctgtgtatgagttttagattgaccttcatccatgagcttagcaataccaaaatcactaacatgtgca 16836  T
Q  297 accatatcttcatccagcaacacatt 322  Q
    ||||||| |||||||| ||| |||||    
T  16835 accatattttcatccaacaagacatt 16810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 322
Target Start/End: Complemental strand, 4385 - 4296
Alignment:
Q  233 tgtatgagtttttgattgtccttcatccaagagcttggaaatcccaaaatcactcacatgtgcaaccatatcttcatccagcaacacatt 322  Q
    |||||||||||| || |||||||| |||| |||||||| ||| ||||||||||| |||||||||||||||| |||||||| ||| |||||    
T  4385 tgtatgagttttagaatgtccttcgtccatgagcttggcaataccaaaatcactaacatgtgcaaccatattttcatccaacaagacatt 4296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 10611981 - 10611947
Alignment:
Q  276 ccaaaatcactcacatgtgcaaccatatcttcatc 310  Q
    ||||||||||||||||||||||||||||| |||||    
T  10611981 ccaaaatcactcacatgtgcaaccatatcatcatc 10611947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University