View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18003_high_48 (Length: 299)

Name: NF18003_high_48
Description: NF18003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18003_high_48
NF18003_high_48
[»] chr5 (3 HSPs)
chr5 (1-299)||(8939691-8939989)
chr5 (64-154)||(33155589-33155679)
chr5 (78-122)||(2818988-2819032)
[»] chr8 (7 HSPs)
chr8 (5-165)||(33474216-33474378)
chr8 (70-154)||(6863048-6863132)
chr8 (72-168)||(7664008-7664104)
chr8 (117-168)||(13921204-13921255)
chr8 (50-168)||(3795343-3795460)
chr8 (64-154)||(34018225-34018315)
chr8 (40-152)||(29264562-29264674)
[»] chr1 (3 HSPs)
chr1 (7-168)||(41625480-41625643)
chr1 (75-154)||(7890387-7890466)
chr1 (72-126)||(27925360-27925414)
[»] chr4 (3 HSPs)
chr4 (96-168)||(51079059-51079131)
chr4 (80-125)||(8482372-8482417)
chr4 (32-121)||(15835312-15835400)
[»] chr6 (3 HSPs)
chr6 (62-156)||(27598160-27598254)
chr6 (80-151)||(13587603-13587674)
chr6 (72-122)||(12329717-12329767)
[»] chr3 (2 HSPs)
chr3 (34-152)||(52416382-52416500)
chr3 (93-150)||(40285439-40285496)
[»] chr7 (1 HSPs)
chr7 (87-125)||(46981398-46981436)
[»] chr2 (1 HSPs)
chr2 (83-152)||(42206094-42206163)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 8939989 - 8939691
Alignment:
Q  1 tggttttgtctaacatgcacaagtaaattatttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaat 100  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8939989 tggttttgtctaacatgcacaagtaaattacttgcacaatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaac 8939890  T
Q  101 ggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagaactagccttactctatatatgaaga 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  8939889 ggtgaaacttattgatccaatggtggaaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagacttagctttactctatatatgaaga 8939790  T
Q  201 tgcaaatgaatttgaattgatctaataactagtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939789 tgcaaatgaatttgaattgatctaataactagtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaat 8939691  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 33155589 - 33155679
Alignment:
Q  64 ggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 154  Q
    ||||| |||| ||| ||||| | ||| ||||||||||||||  | |||||||||||||||||  ||| |  ||||||||| ||||||||||    
T  33155589 ggatcaaaaagtcaaatcatttctcatttaatttaatggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagactt 33155679  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 2819032 - 2818988
Alignment:
Q  78 catcatatttcaattaatttaatggtgaaacttattgatccaatg 122  Q
    |||||||||||| ||||| ||||||||| | ||||||||||||||    
T  2819032 catcatatttcatttaatctaatggtgagatttattgatccaatg 2818988  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 33474378 - 33474216
Alignment:
Q  5 tttgtctaacatgcacaagtaaatta--tttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatgg 102  Q
    ||||||||||||||| |||| |||||  ||||||| ||||||||||  || || || | ||||||  | |||| |||| |||||| | ||||||||||||    
T  33474378 tttgtctaacatgcataagttaattacttttgcaccatgcacaagtcgacattttagcattggatttataaattacattatattttatttaatttaatgg 33474279  T
Q  103 tgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgt 165  Q
    ||||||||||||||| |||||||  |||||| |||| |||| ||||||||||| |||||||||    
T  33474278 tgaaacttattgatcaaatggtgaaaacaaccttgtacatgatgcaagacttatcttccttgt 33474216  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 6863132 - 6863048
Alignment:
Q  70 aaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 154  Q
    |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| |  ||||| ||| ||||||||||    
T  6863132 aaaagtcacatcatatttcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagactt 6863048  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 7664008 - 7664104
Alignment:
Q  72 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 168  Q
    |||| ||||||||||||| |||||||||||| || | || |||||| |||||| | || | |||  |||||||||||||||||  ||| ||||||||    
T  7664008 aaattacatcatatttcatttaatttaatggggagattttttgatctaatggttgaaatagcttgatgcatggtgcaagactttcctttcttgtgca 7664104  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 13921204 - 13921255
Alignment:
Q  117 ccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 168  Q
    |||||||||| |||||| |||| |||||||||||||||| | ||||||||||    
T  13921204 ccaatggtggaaacaaccttgtacatggtgcaagacttatcatccttgtgca 13921255  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 3795460 - 3795343
Alignment:
Q  50 tactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaa 149  Q
    ||||||||||  || |||| | ||||||||  |||||| | |||| ||| | |||||||||||| |||||||| ||| |||||| ||||||||| ||||     
T  3795460 tactttctatgattcgatcaataaatcacaatatatttaatttaacttacttgtgaaacttatt-atccaatgttggaaacaacattgtgcatgttgcat 3795362  T
Q  150 gacttaacttccttgtgca 168  Q
    |||||  | ||||||||||    
T  3795361 gacttctcatccttgtgca 3795343  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 34018225 - 34018315
Alignment:
Q  64 ggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 154  Q
    ||||| |||| ||| ||||| | ||| |||||||||||||| || ||||||||||||||||   ||| |  ||||||||| ||||||||||    
T  34018225 ggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactagcttgtgcatgatgcaagactt 34018315  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 29264674 - 29264562
Alignment:
Q  40 tgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtg 139  Q
    |||||||||||| || | | | ||||||| | ||||| || ||||||| | ||||||||||  |||  |||||||||||| ||||   ||| || |||||    
T  29264674 tgcacaagtttatttgccaccattggatcaataaatctcaccatatttaatttaatttaatattgagccttattgatccagtggtaaaaaccacattgtg 29264575  T
Q  140 catggtgcaagac 152  Q
    |||||||||||||    
T  29264574 catggtgcaagac 29264562  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 41625643 - 41625480
Alignment:
Q  7 tgtctaacatgcacaagtaaatta--tttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtg 104  Q
    ||||||||||||| ||| ||||||  ||||||| ||  |||||| || |||||| | ||||||| |  |||| |||||||||| | |||||||||| |||    
T  41625643 tgtctaacatgcataagcaaattacttttgcaccatatacaagtctattttctaccattggatcaatgaatctcatcatattttatttaatttaatagtg 41625544  T
Q  105 aaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 168  Q
    ||| ||||||||| |||||||| || ||  ||||||||||||||||||||| ||| | ||||||    
T  41625543 aaatttattgatctaatggtggaaagaatcttgtgcatggtgcaagacttatcttgcatgtgca 41625480  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 7890466 - 7890387
Alignment:
Q  75 tcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 154  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| |||  ||| |||||||||||| ||||| ||||    
T  7890466 tcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatactt 7890387  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 27925360 - 27925414
Alignment:
Q  72 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtgg 126  Q
    |||||||||||||| ||| || |||||||  ||||| ||||||||||||||||||    
T  27925360 aaatcacatcatatctcattttatttaatcatgaaatttattgatccaatggtgg 27925414  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 51079131 - 51079059
Alignment:
Q  96 ttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 168  Q
    ||||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||| ||||||||    
T  51079131 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgca 51079059  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 8482417 - 8482372
Alignment:
Q  80 tcatatttcaattaatttaatggtgaaacttattgatccaatggtg 125  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||    
T  8482417 tcatatttcatttaatttaatggtgaaatttattgaaccaatggtg 8482372  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 15835312 - 15835400
Alignment:
Q  32 ttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaat 121  Q
    |||||| ||||||||||||| ||| |||| || |||| |||| || |||||||||| | || | ||||| |||||| |||||||||||||    
T  15835312 ttgcaccatgcacaagtttatttt-tatcattagatcaaaaagtcgcatcatattttatttcacttaatcgtgaaatttattgatccaat 15835400  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 27598254 - 27598160
Alignment:
Q  62 ttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaa 156  Q
    ||||||| | ||||| || ||||||||| ||||||||||  |||  |||||||||||||||||   ||| || ||||||||||||||||||||||    
T  27598254 ttggatcaataaatctcaccatatttcatttaatttaatactgagccttattgatccaatggtaaaaaccacgttgtgcatggtgcaagacttaa 27598160  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 13587674 - 13587603
Alignment:
Q  80 tcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaaga 151  Q
    |||||||||| | |||||||| |||| | |||||||||||||||| | |||||| || ||||||||||||||    
T  13587674 tcatatttcattcaatttaatagtgagatttattgatccaatggtagaaacaaccttatgcatggtgcaaga 13587603  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 12329767 - 12329717
Alignment:
Q  72 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatg 122  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||| |||||    
T  12329767 aaatcacataatatctcaattaatttaatggtgaaatttattgattcaatg 12329717  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 52416500 - 52416382
Alignment:
Q  34 gcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaac 133  Q
    |||| ||||||||||||  |||||| ||||| ||| | || |||||||| ||  ||||| ||  || |||   |||||||||||||||||||| |||||     
T  52416500 gcaccatgcacaagtttgttttctaccgttgaatcaacaagtcacatcaaatcacaattgatccaagggtacgacttattgatccaatggtggaaacaag 52416401  T
Q  134 tttgtgcatggtgcaagac 152  Q
    | |||||||||||||||||    
T  52416400 tatgtgcatggtgcaagac 52416382  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 40285439 - 40285496
Alignment:
Q  93 aatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaag 150  Q
    |||||||| |||| ||||||||||| ||| ||   |||||||||||||||||||||||    
T  40285439 aatttaatagtgagacttattgatcaaattgtataaacaactttgtgcatggtgcaag 40285496  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 46981398 - 46981436
Alignment:
Q  87 tcaattaatttaatggtgaaacttattgatccaatggtg 125  Q
    |||||||||||||||||| || |||||||||||||||||    
T  46981398 tcaattaatttaatggtgtaaattattgatccaatggtg 46981436  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 42206163 - 42206094
Alignment:
Q  83 tatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagac 152  Q
    ||||||| ||||||||| ||||  ||||||||||| | |||| | || ||| ||||||||||||||||||    
T  42206163 tatttcatttaatttaacggtgcgacttattgatctattggtagaaaaaaccttgtgcatggtgcaagac 42206094  T

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